Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_002555.1 Length=2622 Score E Sequences producing significant alignments: (Bits) Value seq12 78.8 2e-11 >seq12 Length=14929429 Score = 78.8 bits (86), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 2344 AGCTCTCTGAATGTTCGGATGGAAATGTGTTGACCTTGTTGGGGAGACCAGGTCGAAGAA 2403 |||||| |||||||| ||||||||||||| | ||| ||||||| || | ||||||||| Sbjct 10862398 AGCTCTTTGAATGTTTGGATGGAAATGTGCTAGCCTATTTGGGGATACTATGTCGAAGAA 10862457 Query 2404 TCGTTGATTTTG-GCAGCAGTAGTTGCCTTCGAATTGAAGAAGCACATGGAGATGAGGCT 2462 || |||| |||| | || | ||| ||| |||| | |||| |||||||| | Sbjct 10862458 TCATTGACTTTGTGTTTCA-AACTTGTGAGGGAAGTGAAACAAAGCATGAAGATGAGGTT 10862516 Query 2463 CCCCATTTTCATGGAGCTCT 2482 || || ||| || |||||| Sbjct 10862517 ACCTATCTTCGTGTAGCTCT 10862536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8281378788112