Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_004655.1 Length=2785 Score E Sequences producing significant alignments: (Bits) Value seq12 77.0 6e-11 >seq12 Length=14929429 Score = 77.0 bits (84), Expect = 6e-11 Identities = 105/142 (74%), Gaps = 6/142 (4%) Strand=Plus/Plus Query 2363 AGCTCCTTGAATGTTCGGATGGAAATGTGTTGATCGTGTTGGGGATACCAGGTCGAAGAA 2422 ||||| ||||||||| ||||||||||||| | | |||||||||| | ||||||||| Sbjct 10862398 AGCTCTTTGAATGTTTGGATGGAAATGTGCTAGCCTATTTGGGGATACTATGTCGAAGAA 10862457 Query 2423 TCGCTTA-TTTGTGCATGAGAATTTGCCTTCGAACTGAA--TAAGCATGTGGAGATGAGG 2479 || | | |||||| | | || ||| ||| |||| ||||| || |||||||| Sbjct 10862458 TCATTGACTTTGTGTTTCA-AACTTGTGAGGGAAGTGAAACAAAGCA--TGAAGATGAGG 10862514 Query 2480 TTGCCCATCATCGTGAAGTTCT 2501 || || ||| ||||| || ||| Sbjct 10862515 TTACCTATCTTCGTGTAGCTCT 10862536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8799758027500