Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_004675.1 Length=2766 Score E Sequences producing significant alignments: (Bits) Value seq12 100 5e-18 >seq12 Length=14929429 Score = 100 bits (110), Expect = 5e-18 Identities = 110/142 (77%), Gaps = 6/142 (4%) Strand=Plus/Plus Query 2331 AGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGTTTGGGGATACCAGGTCGAAGAA 2390 ||||| |||||||||||||||||||||||| ||| ||||||||||| | ||||||||| Sbjct 10862398 AGCTCTTTGAATGTTTGGATGGAAATGTGCTAGCCTATTTGGGGATACTATGTCGAAGAA 10862457 Query 2391 TCGGTGATTCTTGCAGTTGAATTTTCT-CTCGAACTGAA--TAAGCACGTGGAGATGAGG 2447 || ||| | ||| || || || | ||| |||| ||||| || |||||||| Sbjct 10862458 TCATTGACT-TTGTGTTTCAAACTTGTGAGGGAAGTGAAACAAAGCA--TGAAGATGAGG 10862514 Query 2448 TTCCCCATTTTCGTGTAGCTCT 2469 || || || ||||||||||||| Sbjct 10862515 TTACCTATCTTCGTGTAGCTCT 10862536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8738959699310