Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_005844.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq12 80.6 5e-12 >seq12 Length=14929429 Score = 80.6 bits (88), Expect = 5e-12 Identities = 105/143 (73%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 2304 AGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTTGTTGGGGATACCAAATCGAAGAA 2363 ||||| |||||||| ||||||||||||||| ||| |||||||||| | |||||||| Sbjct 10862398 AGCTCTTTGAATGTTTGGATGGAAATGTGCTAGCCTATTTGGGGATACTATGTCGAAGAA 10862457 Query 2364 TCGTTGA-TTCGTGCATCTGAATTTCCCCTCGAATTGGATAAGCACATGGAGATGAGGGC 2422 || |||| || ||| || || || ||| || | | |||| |||||||| Sbjct 10862458 TCATTGACTTTGTGTTTC-AAACTTGTGAGGGAAGTGAAACAAAGCATGAAGATGAGGTT 10862516 Query 2423 TCCCATCTTCGTGTAGTTCTCTA 2445 || |||||||||||| ||| || Sbjct 10862517 ACCTATCTTCGTGTAGCTCTTTA 10862539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8665368530992