Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_005855.1 Length=2779 Score E Sequences producing significant alignments: (Bits) Value seq12 82.4 1e-12 >seq12 Length=14929429 Score = 82.4 bits (90), Expect = 1e-12 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 2262 TCACCCCAATCGATGGTGTCTCCGTCTTTATCGATGTAGGACTTGACATCAGATGAGGAT 2321 |||||||| || | || |||| |||| |||||| ||||| ||| ||| Sbjct 10862336 TCACCCCATTCTTTATAATCACCGTATTTAGAGATGTATTCATTGACGACAGTGGAGTCA 10862395 Query 2322 TTAGCTCCCTGAATGTTTGGATGGAAATGTGTTGATCTACTTGGGGATGCCAGGTCGAAG 2381 ||||| |||||||||||||||||||||| | ||| |||||||| | | ||||||| Sbjct 10862396 AAAGCTCTTTGAATGTTTGGATGGAAATGTGCTAGCCTATTTGGGGATACTATGTCGAAG 10862455 Query 2382 AATCTGTTA-TTCGTGCACTGGTACTTGCCTTCGAACTGAACAAGGGCATGCAGATGAGG 2440 |||| | | || ||| | ||||| ||| |||| | ||||| |||||||| Sbjct 10862456 AATCATTGACTTTGTG-TTTCAAACTTGTGAGGGAAGTGAAACAAAGCATGAAGATGAGG 10862514 Query 2441 TTCCCCATTCTCGTGGAGCTCT 2462 || || || ||||| |||||| Sbjct 10862515 TTACCTATCTTCGTGTAGCTCT 10862536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8780558555440