Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_007726.1 Length=2674 Score E Sequences producing significant alignments: (Bits) Value seq12 86.0 1e-13 >seq12 Length=14929429 Score = 86.0 bits (94), Expect = 1e-13 Identities = 107/142 (75%), Gaps = 6/142 (4%) Strand=Plus/Plus Query 2265 AGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTTGTTTGGGATACCAGGTCGAAGAG 2324 ||||| |||||||| ||||||||||||||| ||| || ||||||| | |||||||| Sbjct 10862398 AGCTCTTTGAATGTTTGGATGGAAATGTGCTAGCCTATTTGGGGATACTATGTCGAAGAA 10862457 Query 2325 TCTTTGA-TTTGTGCAGACGAACTTCCCTTCGAACTGGA--TAAGCACGTGGAGATGAGG 2381 || |||| |||||| | ||||| ||| || | ||||| || |||||||| Sbjct 10862458 TCATTGACTTTGTG-TTTCAAACTTGTGAGGGAAGTGAAACAAAGCA--TGAAGATGAGG 10862514 Query 2382 TTCCCCATCTTCGTGAAGCTCT 2403 || || ||||||||| |||||| Sbjct 10862515 TTACCTATCTTCGTGTAGCTCT 10862536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8447774343360