Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_010949.1 Length=2561 Score E Sequences producing significant alignments: (Bits) Value seq12 91.5 2e-15 >seq12 Length=14929429 Score = 91.5 bits (100), Expect = 2e-15 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 2146 AGCTCCCTGAATGTTTGGATGGAAATGTGCTGATCTGGTTGGGGATACCAAATCGAAGAA 2205 ||||| |||||||||||||||||||||||| || |||||||||| | |||||||| Sbjct 10862398 AGCTCTTTGAATGTTTGGATGGAAATGTGCTAGCCTATTTGGGGATACTATGTCGAAGAA 10862457 Query 2206 TCGTTGATTGTGGCATTTGAATTTGCCTTCGAACTGTA--TAAGCACGTGGAGATGAGGT 2263 || |||| | || || || ||| ||| || | ||||| || ||||||||| Sbjct 10862458 TCATTGACTTTGTGTTTCAAACTTGTGAGGGAAGTGAAACAAAGCA--TGAAGATGAGGT 10862515 Query 2264 TCCCCATCTTCGTGAAGTTCTCTGGTTA 2291 | || ||||||||| || ||| | |||| Sbjct 10862516 TACCTATCTTCGTGTAGCTCTTTAGTTA 10862543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8086184002148