Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_016998.1 Length=2675 Score E Sequences producing significant alignments: (Bits) Value seq12 84.2 4e-13 >seq12 Length=14929429 Score = 84.2 bits (92), Expect = 4e-13 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 2193 ATTCACCCCATTCGAGAGTATCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGACGATG 2252 ||||||||||||| | ||| |||| || |||||| |||||| | | || Sbjct 10862334 ATTCACCCCATTCTTTATAATCACCGTATTTAGAGATGTATTCATTGACGACAGTGGAGT 10862393 Query 2253 ATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGA 2312 ||||| |||||||||||||||||||||||| ||| |||||||||| | ||||| Sbjct 10862394 CAAAAGCTCTTTGAATGTTTGGATGGAAATGTGCTAGCCTATTTGGGGATACTATGTCGA 10862453 Query 2313 ACAATCTCTGA-TTTGTGATCTGTGCTTTGCCTTCGAGTTGGA--TAAGCACGTGGAGAT 2369 | |||| ||| |||||| | | ||| || || | ||||| || |||| Sbjct 10862454 AGAATCATTGACTTTGTG-TTTCAAACTTGTGAGGGAAGTGAAACAAAGCA--TGAAGAT 10862510 Query 2370 GAGGTTGCCCATCTTCGTGTAACTCT 2395 |||||| || ||||||||||| |||| Sbjct 10862511 GAGGTTACCTATCTTCGTGTAGCTCT 10862536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8450974257884