Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_024304.1 Length=2602 Score E Sequences producing significant alignments: (Bits) Value seq12 82.4 1e-12 >seq12 Length=14929429 Score = 82.4 bits (90), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 8/146 (5%) Strand=Plus/Plus Query 2190 AGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTTGTTGGGGATACCAAGTCGAAGAA 2249 ||||| |||||||| ||||||||||||||| ||| |||||||||| | ||||||||| Sbjct 10862398 AGCTCTTTGAATGTTTGGATGGAAATGTGCTAGCCTATTTGGGGATACTATGTCGAAGAA 10862457 Query 2250 TCGTTGA-TTTGTG---CAGATGTATTTTCCTTCGAATTGGATAAGCACATGGAGATGAG 2305 || |||| |||||| || | || ||| || | | |||| ||||||| Sbjct 10862458 TCATTGACTTTGTGTTTCA----AACTTGTGAGGGAAGTGAAACAAAGCATGAAGATGAG 10862513 Query 2306 GCTCCCCATTTTCGTGTAGCTCTCTA 2331 | | || || ||||||||||||| || Sbjct 10862514 GTTACCTATCTTCGTGTAGCTCTTTA 10862539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8217380497632