Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_027215.1 Length=2796 Score E Sequences producing significant alignments: (Bits) Value seq12 87.8 3e-14 >seq12 Length=14929429 Score = 87.8 bits (96), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 2340 AGCTCCCTGAATGTTTGGATGGAAATGTGTTGATCTACTTGGGGATACCAGGTCGAAGAA 2399 ||||| |||||||||||||||||||||| | ||| |||||||||| | ||||||||| Sbjct 10862398 AGCTCTTTGAATGTTTGGATGGAAATGTGCTAGCCTATTTGGGGATACTATGTCGAAGAA 10862457 Query 2400 TCTGTTA-TTTGTGCACTGGTACTTTCCTTCGAACTGAACAAGGGCATGCAGATGAGGTT 2458 || | | |||||| | |||| ||| |||| | ||||| |||||||||| Sbjct 10862458 TCATTGACTTTGTG-TTTCAAACTTGTGAGGGAAGTGAAACAAAGCATGAAGATGAGGTT 10862516 Query 2459 CCCCATTTTCGTGAAGCTCT 2478 || || |||||| |||||| Sbjct 10862517 ACCTATCTTCGTGTAGCTCT 10862536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8834957059610