Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_029804.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq12 93.3 7e-16 >seq12 Length=14929429 Score = 93.3 bits (102), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 2347 AGCTCTCTGAATGTTTGGATGGTAATATGCTGACCTGGTTGGGGATTCCAGGTCGAAGAA 2406 |||||| ||||||||||||||| ||| |||| ||| |||||||| | | ||||||||| Sbjct 10862398 AGCTCTTTGAATGTTTGGATGGAAATGTGCTAGCCTATTTGGGGATACTATGTCGAAGAA 10862457 Query 2407 TCTCTGA-TTTGTGCAGTTGTATTTGCCCTGGAATTGAACCAGGGCATGCAGATGAGGTT 2465 || ||| |||||| | | ||| |||| |||| || ||||| |||||||||| Sbjct 10862458 TCATTGACTTTGTG-TTTCAAACTTGTGAGGGAAGTGAAACAAAGCATGAAGATGAGGTT 10862516 Query 2466 CCCCAGATTCGTGTAGTTCTCTA 2488 || | ||||||||| ||| || Sbjct 10862517 ACCTATCTTCGTGTAGCTCTTTA 10862539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8719767077900