Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_031340.1 Length=2905 Score E Sequences producing significant alignments: (Bits) Value seq12 86.0 1e-13 >seq12 Length=14929429 Score = 86.0 bits (94), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 2523 AGCTCCCTGAATGTTTGGATGGAAATGTGCTGATCGGCTTGGGGATACCAGGTCGAAGAA 2582 ||||| |||||||||||||||||||||||| | |||||||||| | ||||||||| Sbjct 10862398 AGCTCTTTGAATGTTTGGATGGAAATGTGCTAGCCTATTTGGGGATACTATGTCGAAGAA 10862457 Query 2583 TCGTTGA-TTTGTCGTCTGGAATTTCCCCTTGAATTGAAGCAGTGCATGCAGATGCGGTT 2641 || |||| ||||| || | || || ||| |||| || ||||| ||||| |||| Sbjct 10862458 TCATTGACTTTGT-GTTTCAAACTTGTGAGGGAAGTGAAACAAAGCATGAAGATGAGGTT 10862516 Query 2642 GCCCATCTT 2650 || ||||| Sbjct 10862517 ACCTATCTT 10862525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9183747468700