Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_031466.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq12 82.4 1e-12 >seq12 Length=14929429 Score = 82.4 bits (90), Expect = 1e-12 Identities = 108/145 (74%), Gaps = 6/145 (4%) Strand=Plus/Plus Query 2321 AGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTTGTTGGGGATACCAAATCGAAGAA 2380 ||||| |||||||||||||||||||||||| ||| |||||||||| | |||||||| Sbjct 10862398 AGCTCTTTGAATGTTTGGATGGAAATGTGCTAGCCTATTTGGGGATACTATGTCGAAGAA 10862457 Query 2381 TCGTTGA-TTCGTGCATCTGAATTTCCCCTCGAATTGGA--TAAGCACGTGGAGATGAGG 2437 || |||| || ||| || || || ||| || | ||||| || |||||||| Sbjct 10862458 TCATTGACTTTGTGTTTC-AAACTTGTGAGGGAAGTGAAACAAAGCA--TGAAGATGAGG 10862514 Query 2438 GCTCCCATCTTCGTGTAGTTCTCTA 2462 || |||||||||||| ||| || Sbjct 10862515 TTACCTATCTTCGTGTAGCTCTTTA 10862539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8719767077900