Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20vulgaris_20[genbank_20GCA_5F001077355.1_202015-01-29] 229 sequences; 1,504,784 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq15 374 3e-100 seq174 262 2e-66 seq173 174 6e-40 seq49 174 6e-40 >seq15 Length=708 Score = 374 bits (414), Expect = 3e-100 Identities = 321/397 (81%), Gaps = 0/397 (0%) Strand=Plus/Minus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 561 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 502 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 501 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 442 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 441 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 382 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCG 2799 |||||||||||||||||||||||||| | ||||| || || ||| | ||||||||||| Sbjct 381 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 322 Query 2800 GAGTTTAGCGAAAACATTATCAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2859 || |||| ||||||||||| |||||||||||||| |||||||| |||||||| | ||| Sbjct 321 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 262 Query 2860 GCGTACACCCTGCGTATTAAAGCAGGATTCAAAGAAACTGTAATGGATGCCGAGGAAAAT 2919 |||| ||| ||||| | |||||| || || | | | || || || ||||| Sbjct 261 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 202 Query 2920 GCTCGTCAGAAATTACGCGCAAATGGACTGAAGTGAT 2956 | ||||| |||||||| ||| | ||| ||| || || Sbjct 201 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAAT 165 >seq174 Length=946 Score = 262 bits (290), Expect = 2e-66 Identities = 538/798 (67%), Gaps = 14/798 (2%) Strand=Plus/Minus Query 3562 CTTAAAAATATTTGGTCTGCTCCGCTGCCTCCGGAAACCAAATTGGCTGAAGAAATGGGT 3621 || ||||| |||||| |||||||||| ||||| || || | | || ||||| Sbjct 945 CTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACG 886 Query 3622 ATTGAAAGCAATTCCATTGATATTATGGGTTTGCAAGCCGCTTATGCGCAGCTTCACACT 3681 | | | || || ||||| ||||||||| ||||||| |||||||| | | || ||| Sbjct 885 ACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACT 826 Query 3682 GAGCAGGAGCGTACTTACTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTTGGCGGT 3741 || || || ||| |||||| ||||||||||||| ||||||||| || ||||| ||| Sbjct 825 GACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGT 766 Query 3742 TCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCACACCGACTTCTGGGCT 3801 |||||| ||||| || || ||||| || || ||||| |||| | | | ||||||| Sbjct 765 AAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCA 706 Query 3802 TCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACAATTCTCTGGTCGAGTC 3861 || || || || ||||| || || |||||| | || | || || || |||||||| || Sbjct 705 TCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTT 646 Query 3862 CAGCAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTCATGATG 3921 || ||||| | |||||| || |||||||| ||||| || ||||||||||| ||| | Sbjct 645 CAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTT 586 Query 3922 ACTTTGGCTCTGATTCGCTTCCCGCCTATCAGTCCGTTGGAGCACCATTATCTTGCTGGT 3981 ||| | || || |||| || ||||||| | ||| || || ||| | | Sbjct 585 ACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCT 526 Query 3982 AAGTCTCAGTTAACCTATACCGACCTTGCTGGCGACCCGGCTCTGATTGGTAACTTGCCT 4041 || | || || |||||||| ||||||||||||| | | || ||| |||||||| Sbjct 525 AAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCG 466 Query 4042 CCTCGCGAGATTAGTTATCGA-GATCTGTTCCGTGATGGTCGTTCTGGTATTAAGATTAA 4100 || || || ||| ||| | ||| | |||||| |||| ||| || ||| |||| Sbjct 465 CCGCGTGAAATT-TCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAA 407 Query 4101 AGTTGCCGAGTCTATTTGGTATCGTACTCATCCTGATTACGTTAACTTTAAGTATCATGA 4160 |||| ||| | ||||||||| | ||| || ||| | ||||| Sbjct 406 GATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCT 347 Query 4161 TTTGCATGGATTCCCGTTCCTTGATGATGCGCCTGGTACATCTACTGGTGATAATCTTCA 4220 | | | || ||||| ||| || | || ||| || |||||| || | || Sbjct 346 TCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTG---ATTTGCA 299 Query 4221 GGAAGCTATCCTTGTTCGTCATCAGGACTATGATGCTTGCTTCCAGTCTCAGCAGTTGCT 4280 ||| | ||| |||| || || || ||||| || |||||||| |||||| | Sbjct 298 AGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTT 239 Query 4281 ACAGTGGAACAAACAGGCTCGCTATAACGTTAGTGTTTATCGCCATATGCCTACTGTACG 4340 |||||||| | |||| | | ||| || | ||||||||| || |||| || || Sbjct 238 GCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCG 179 Query 4341 TGATTCCATTATGACCTC 4358 ||||| || ||||| || Sbjct 178 CGATTCAATCATGACTTC 161 >seq173 Length=1356 Score = 174 bits (192), Expect = 6e-40 Identities = 280/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 1293 GGCTGGTTCTTCGTATTTGATACGTTAACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1352 || ||||| |||| ||||| || | || | ||||| ||||| || |||| ||| || Sbjct 1021 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 962 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 961 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 902 Query 1413 GAAGGTCGTTCGGTCAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || || ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 901 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 842 Query 1473 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1530 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 841 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 784 Query 1531 CTTTGGGAAGTCATGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || |||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 783 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 725 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1649 | || | | |||||||||||| | || || || || |||||||| || Sbjct 724 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 665 Query 1650 GACGCTTATTCCCGCAAAGGTTGGCTGTGGCCTGTTGA 1687 ||||||| ||| || |||||| ||||||||||||| Sbjct 664 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 627 >seq49 Length=277 Score = 174 bits (192), Expect = 6e-40 Identities = 196/259 (76%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 3105 TGACCTCTCTCATCTTGCCTT--TGACTGTGGCATGCTTGGTCGTCTGAAGACTGTTTCA 3162 |||||| || ||||||| ||| | ||| | || | |||||||||| | || ||||| Sbjct 262 TGACCTTTCCCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCA 205 Query 3163 TGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTT 3222 ||||| |||||||||||||| ||||| ||| | || || ||||| ||| | |||||| Sbjct 204 ACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTT 145 Query 3223 TCCCCTCTGCGTCGTGGTTTAGCTATTGATTCTAAGGTTGATTTTTTCACCTTCTACATT 3282 || || |||||||||| | |||||||| |||| || || |||| || || || | Sbjct 144 TCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTC 85 Query 3283 CCGCATCGTCATGTTTATGGCGACCAGTGGATTCAGTTTATGCGTGATGGTGTTAATGCT 3342 || |||||||| |||||||| || ||||||||| |||| ||| |||||||||||||| Sbjct 84 CCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCC 25 Query 3343 CAGCCTCTGCCTTCTGTTA 3361 ||||| || |||||| Sbjct 24 ACTCCTCTCCCGACTGTTA 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19363150115556