Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20vulgaris_20[genbank_20GCA_5F001077355.1_202015-01-29] 229 sequences; 1,504,784 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq173 888 0.0 seq15 336 8e-89 seq174 271 3e-69 seq159 150 6e-33 seq49 147 8e-32 >seq173 Length=1356 Score = 888 bits (984), Expect = 0.0 Identities = 993/1324 (75%), Gaps = 2/1324 (0%) Strand=Plus/Minus Query 462 TAATCGAAGAATTGCAAGAATGCTATGACGTGCTCGGACAACTTGATATTAATAACACTA 521 |||| || |||||| | ||||||| | |||||| |||||||||||||||||||||| Sbjct 1323 TAATGGATGAATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTA 1264 Query 522 TAGACCACAAACCCCTCGGTAATGACCATTGGAACCTCCTCTATGAAAAACCCGTATACA 581 |||||||| ||| || | || | ||| | | || || | || ||| Sbjct 1263 TAGACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGT-TACG 1205 Query 582 AACATTGGTATCA-GCTCGTTTCAAATCGACCCCTTAAAGATATCCGCGCCGATTACAAC 640 | || | || ||| | | | | || || ||||| ||||| |||| || || || Sbjct 1204 CAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTATAAT 1145 Query 641 TATGCAAAGGCTAAGGGTGTTAAAGATGAGTGCTCAAAAATCTTGGAGGAGTCAACTATG 700 || | || || ||| |||| |||||||| |||| | | |||||| || |||||| Sbjct 1144 TACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATG 1085 Query 701 AAGTCTCGACGTGGCTTTACCGTTCAAAGATTAATGAATGCTATGCGTACTGCCCATTCT 760 || || || | |||||| | |||| | || |||||||| ||||| || ||| || Sbjct 1084 AAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCT 1025 Query 761 AAGGGCTGGTATGTCGTATTCGATACTCTTACTCTAGCCGATGACCGCTTAAAGGATTTC 820 | || |||| | |||| || || ||||| || | || || ||||| ||| ||| || Sbjct 1024 GATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTT 965 Query 821 TATGATAATCCCAATGCTCTTCGTGACTACTTCCGTGATATTGGTCGTATGGTGCTTACT 880 |||||||||||||||||| | |||||||| || |||||||||||||||||||| ||| || Sbjct 964 TATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCT 905 Query 881 GCCGAAGGTCGCTCGGTGCATGACTCATCTTCCGACTGCTATCAGTATTTTTGTGTGCCA 940 ||||| |||||| || |||| ||| |||||||||||||||||||||||||||| Sbjct 904 GCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCT 845 Query 941 GAGTATGGTACACAGCACGGTCGTCTACATTTCCACGCAGTGCATCTTATGCGCACACTT 1000 |||||||||||| | || ||||| |||||||| || ||||| ||||||| |||||| Sbjct 844 GAGTATGGTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTT 785 Query 1001 CCTCTGGGTTCTCTGCACCCTAACTTCGGTAAGCTGGTACGCATCAATCGGCAAATAAAT 1060 ||| ||| | ||||||| || ||| | |||||||| || || ||||| Sbjct 784 CCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAAT 725 Query 1061 AGCTTGCAAAACACGTGGCCTTATGGTTACTCTATGCCCATCGCAGTCCGGTACTCCCAA 1120 ||||||||||| |||||||||||||||||| ||||||||||||||| || ||| | || Sbjct 724 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 665 Query 1121 GACGCATTCTCTCGCGCTGGCTGGCTCTGGCCTGTGGACTCAAAGGGTGAACCCCTTAAA 1180 ||||| || || || |||| ||| | |||||||| || | || ||||| || |||||| Sbjct 664 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAA 605 Query 1181 GCTACCTCGTATATGGCTGTAGGCTTCTACGTTGCTAAATACGTTAACAAAAAATCAGAT 1240 |||||| ||||||||||| || ||||| || |||||||||||||||||||| |||||| Sbjct 604 GCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGAT 545 Query 1241 ATTGACATGGCCGTAAAAGGCCTAGGGAATAAAGAATGGAACAATTCACTCAAAACCAAA 1300 || ||| | || | ||||| ||||| ||||||||||||||| ||||| |||||||| Sbjct 544 ATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAG 485 Query 1301 ATCAACCTCATACCCAAGAAAGTGTTCAGAATACGAATGTCTCGCAATTTCGGAATGAAA 1360 | || | |||||||| |||||||||| ||||| ||||| ||||| |||||| Sbjct 484 CTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAA 425 Query 1361 CTGTTATCAATGGCTCACCTGTCAGCGGAAACCCTGATGGAACTGACCCAAGTGGGTTAC 1420 || | ||||| | | ||||| |||| | | || |||| ||| | |||||||| Sbjct 424 ATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTAC 365 Query 1421 GACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAGCTCAAATCGAGG 1480 |||| ||| ||||||||| | || |||||||||||||| || | |||| | | || |||| Sbjct 364 GACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAGATTGAGG 305 Query 1481 CTGGCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGCAACCTGTGACGACGAATCTGCTA 1540 |||| ||| |||| ||||||||||||| |||||||||||||||||| |||||||| Sbjct 304 CTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAATCTGCTC 245 Query 1541 AAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCCAACCTACAGAGTTTTATCGCT 1600 ||||| |||||| || || || || || | |||||||| ||||||||||||||| Sbjct 244 AAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCAGAGTTTTATCGCT 185 Query 1601 TCAATGACCACGAAATTAACAAGTACGGATATTTCTGATGAAACCAAAAACTACGTTGCT 1660 || ||||| ||| |||||| | |||||||||||||||| | ||||| || ||| | Sbjct 184 TCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTTGAT 125 Query 1661 TCTGCAGGAATTGCTGTTGCTAACTTACGAATTAAATCGAAGTGGACTGCTGGTGGAAAA 1720 ||||||||| || |||| ||||||||||||||||||||||||||||| |||||| Sbjct 124 AAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAA 65 Query 1721 TGAGGAAATTCAATCTCAACTTAAAAAACTCGAGGTCGTCTTACTTTGCAACCTTTCGCC 1780 |||| |||||| | || ||| | |||||| ||||||||||| |||||||||| Sbjct 64 TGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCC 5 Query 1781 ATCA 1784 |||| Sbjct 4 ATCA 1 >seq15 Length=708 Score = 336 bits (372), Expect = 8e-89 Identities = 334/430 (78%), Gaps = 2/430 (0%) Strand=Plus/Minus Query 2006 TTTCAAACTGCTATCGCTTCTATCAAACTTATTCAAGCATCTTCTGTTCTTGACTTGACA 2065 || || || ||| | || ||||| || || ||||| || ||| | ||| | || || || Sbjct 594 TTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACC 535 Query 2066 GAGGACGATTTTGACTTCTTAACTCGCGACCGTGTCTGGATTGCTACCGACCGTTCACGC 2125 || || ||||| || || | || | || || ||||||||||| ||||| || || Sbjct 534 GAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGT 475 Query 2126 GCTCGCCG-TGCTATCGAGGCTTGCGTATATGGAACACTGGACTTTGTCGGGTATCCTCG 2184 ||||| || ||| | ||||||||||| ||||| || ||||||||||| || || ||||| Sbjct 474 GCTCGTCGCTGCGTT-GAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCG 416 Query 2185 CTTTCCTGCTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATTACGTTCATCCCGTTAA 2244 ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || Sbjct 415 CTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAA 356 Query 2245 CATCCAAACCGCCTGTCTCATCATGGAAGGTGCTGAGTTTACCGAAAACATCGTCAATGG 2304 ||| ||||| |||||||||||||||||||| ||||| ||||| |||||||| | ||||| Sbjct 355 CATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGG 296 Query 2305 TGTTGAACGCCCCGTTAAAGCCTCTGAACTGTTCGCCTTCACTCTTCTTGTTCGCGCCGG 2364 || || || || ||||||||| ||||| ||||||| || || | | ||| ||||| || Sbjct 295 CGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGG 236 Query 2365 AAACAAAGATCTTATCGGTCACGCTGAAACAAACATCCGTGAACAGTTACGCGCTCAAGG 2424 ||||| || || | | |||| ||| |||| | ||| || | ||||| || |||| Sbjct 235 AAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGG 176 Query 2425 TGTCATGTAA 2434 || |||||| Sbjct 175 AGTGATGTAA 166 >seq174 Length=946 Score = 271 bits (300), Expect = 3e-69 Identities = 400/560 (71%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 3104 ATCTGGACTGCGCCACTTCCACCGGATACTCGTACATCTGAAAACATGACTACTGGTACA 3163 || |||||||| || ||||| || || ||| ||| | ||||| ||| ||| Sbjct 936 ATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACC 877 Query 3164 TCCACTATTGACATTATGGGCCTTCAAGCCGCATACGCTAAATTACATACGGAACAGGAA 3223 | |||||||||||||||| || ||||| || || ||||| || ||||| || || ||| Sbjct 876 ACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAA 817 Query 3224 CGTGATTACTTCATGACCCGTTACCGTGACATTATGAAAGAGTTCGGCGGTCATACATCC 3283 ||||||||||||||| ||||||| ||| |||| || || ||| | || || Sbjct 816 CGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCT 757 Query 3284 TATGATGGTGACAATCGTCCTCTTCTGCTCATGCGCTCTGAATTTTGGGCATCTGGCTAT 3343 ||||| | |||||| |||||| | || ||||||||||| | | ||||||||||||||| Sbjct 756 TATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTAT 697 Query 3344 GACGTAGACGGTACTGACCAATCTTCTCTCGGTCAATTCTCTGGTCGCGTTCAGCAGACC 3403 || || || || ||||||||| | || | || || || |||||||| ||||| |||||| Sbjct 696 GATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACC 637 Query 3404 TTCAATCACAAAGTCCCACGCTTCTATGTTCCTGAGCATCGCGTAATTATGACTCTGGCG 3463 | || || || || || |||| ||||||||||||| || || | ||||| ||| Sbjct 636 TATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCG 577 Query 3464 GTTACTCGCTTTCCGCCTACT--CATGAAATGGAAATGCACTATCTTGTAGGTAAAGAAA 3521 || ||| |||||||||||| | ||| || || || || ||| | ||||| Sbjct 576 CTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTACCTTAACGCTAAAGGTG 519 Query 3522 ACTTAACTTATACCGATATTGCTTGTGACCCTGCACTG-ATGGCTAACCTGCCACCTCGT 3580 || |||||||||||||||||| | ||||||| || ||||| ||| |||| || ||| Sbjct 518 CTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC-AACTTGCCGCCGCGT 460 Query 3581 GAAGTATCCTTAAAAGAATTCTTCC--ACTCCTCACCCGATTCTGCTAAATTCAAAATCG 3638 ||| | || | || || | |||| || | | || ||| || || || || | Sbjct 459 GAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCG--TCTAAGAAGTTTAAGATTG 402 Query 3639 CTGAGGGCCAATGGTATCGT 3658 ||||||| || ||||||||| Sbjct 401 CTGAGGGTCAGTGGTATCGT 382 >seq159 Length=903 Score = 150 bits (166), Expect = 6e-33 Identities = 320/475 (67%), Gaps = 17/475 (4%) Strand=Plus/Minus Query 4563 TATGTTTGGCTCTATCGCTGGCGGTATCGCCTCCGCACTTGCCGGAGGCCTTATGGGTAA 4622 ||||||||| |||| ||||||||||| || || || ||||| || ||| ||| ||| Sbjct 474 TATGTTTGGTGCTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAA 415 Query 4623 ATTATTTGGCGGCGGTCAGTCCGCCGACTCTACCGGAATCCAAGGCAACGTCCTTGCTTC 4682 ||| ||||| |||||||| |||| ||| || || ||||| | || |||||| | Sbjct 414 ATTGTTTGGAGGCGGTCAAAAAGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTAC 355 Query 4683 CGACAACAATGTTGTAGGTGCTAATGATGCTGGTATTAAATCTGCTATTCAGGGCTCTAC 4742 ||| |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 354 CGATAACAATACTGTAGGCATGGGTGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAA 295 Query 4743 TGTCCCTAACTCTCAGGAAGCTGCTCCCT-CTGCTATCTCTGGCATCCTTGCCGACTCTG 4801 ||| |||||| || | || || | ||||| | | | ||||| | || | ||| Sbjct 294 TGTTCCTAACCCTGATGAGGCCG-TCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTG 236 Query 4802 G-CAAGCA-----------TGCGCTCTCGTCTCTTACCAATGCTGGTGCAAATAAACTCA 4849 | ||| | | || | | || || ||| | | | |||| | Sbjct 235 GTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGC 176 Query 4850 TGGAGGCTGTCGGCCTTTCT---AAGTCTGCCTCTGACAAGGGCAAGGACACAAAAGACT 4906 | || || || ||| | ||||||||| |||| || || ||||| || || | Sbjct 175 TTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATT 116 Query 4907 ATCTCGCCGCCGCATTCCCCGAGCTCAACCCATGGGAACGTGCTGGTGCTGGCGCTTCTA 4966 |||| || || ||||| || ||||| || | ||||| ||||||||||||| ||||| Sbjct 115 ATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCT 56 Query 4967 GTCCAGGCATGCAAGACGCTGGCTTCCAAAATCAGAAGGAGCTAACCAAGATGCA 5021 | | || ||| ||||| || || | ||||| || ||||| || || ||||| Sbjct 55 CTGCTGGTATGGTTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCA 1 >seq49 Length=277 Score = 147 bits (162), Expect = 8e-32 Identities = 195/271 (72%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 2624 GACCGTGTACCTCATGACTTATCTCACCTTGTCTTTGAGGCTGGTAAAATTGGCCGCCTC 2683 || ||| | || |||||| | || || |||| ||| |||||| | ||||| || || Sbjct 276 GAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTT 217 Query 2684 AAAACTATCTCTTGGACGCCTGGTGGTGCTGGTGACTCTTTCGAGTGTGATATGGTTGGC 2743 | || || || || || | | ||||| ||||| |||||| || |||||| Sbjct 216 ATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGC 157 Query 2744 GCTATTCGTCTGTCCCCTCTTCGTCGTGGCCTCGCTGTTGACTCACGCGTTGATATCTTT 2803 ||| | ||||| || || | ||||||||||| ||| ||||||| || || || ||| Sbjct 156 GCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTT 97 Query 2804 CCTTTCTATATCCCACACCGTCATATCTACGGTCAGCAGTGGATTAACTTTATGAAGGAT 2863 |||| ||| |||| || ||||| | || ||| | ||||||||||| || ||||||||| Sbjct 96 ACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGAT 37 Query 2864 GGCGTTAATGCCTCCCCTCTTCCTCCTGTTA 2894 || ||||||||| | ||||| || |||||| Sbjct 36 GGTGTTAATGCCACTCCTCTCCCGACTGTTA 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17734355580870