Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20vulgaris_20[genbank_20GCA_5F001077355.1_202015-01-29] 229 sequences; 1,504,784 total letters Query= NC_007821.1 Length=6068 Score E Sequences producing significant alignments: (Bits) Value seq15 444 2e-121 seq174 396 1e-106 seq173 165 3e-37 seq49 159 1e-35 >seq15 Length=708 Score = 444 bits (492), Expect = 2e-121 Identities = 340/400 (85%), Gaps = 2/400 (1%) Strand=Plus/Minus Query 2581 TTCAGGCTTCCGCTGTTCTGGATATTACCGAGGAGGATTTTGATTTCCTGACTGGTGATA 2640 |||||||||| || ||| ||||| | ||||| || ||||| ||||| ||||| || | | Sbjct 563 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 504 Query 2641 AAATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTTGAGGCTTGTGTTTATG 2700 || |||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| Sbjct 503 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 444 Query 2701 GAACACTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2760 | || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 443 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 384 Query 2761 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACGGCCTGCCTCATCATGGAAGGCG 2820 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 383 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 324 Query 2821 CTGAGTTTACGGAAAACATTGTTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAGCTCT 2880 |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | | Sbjct 323 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 264 Query 2881 TCGCGTACACCTTGCGTGTTAAGGCCGGATTCAAAGAAACGGTT-CTGAGCGCTGAAGAG 2939 |||||| ||||||||||| || ||| || || || |||| ||| ||||| Sbjct 263 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGA-CGCAGAAGAA 205 Query 2940 AATGCTCGTCAGAAACTTCGTGCAAGTGGAGTAATGTAAT 2979 || | ||||| ||| | |||||| ||||| ||||||| Sbjct 204 AACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAAT 165 >seq174 Length=946 Score = 396 bits (438), Expect = 1e-106 Identities = 570/793 (72%), Gaps = 13/793 (2%) Strand=Plus/Minus Query 3587 AAAACTATTTGGACTGCTCCGCTTCCTCCGGATACTGAAACCTCTCATTCTATGGAGACT 3646 ||||| ||||||||||||||||||||||| || ||||| |||| ||| |||| Sbjct 941 AAAAC-ATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACT 883 Query 3647 GAAACCAACTCCATTGACATTATGGGTTTGCAGGCCGCTTATGCTCAATTACATACTGAG 3706 |||| || ||||||||||||||| |||| || ||||||||| | || |||||||| Sbjct 882 TCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGAC 823 Query 3707 CAGGAGCGTGATTACTTCATGACTCGTTATCGTGATATTGTTAACGAATTTGGAGGTAGT 3766 || || ||||||||||||||| ||||| | |||| || || ||||||||||| Sbjct 822 CAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAA 763 Query 3767 ACTTCTTATGATGCGGATAATCGTCCTTTGCTTGTTATGCATTCTGAGTTCTGGGCCTCA 3826 || |||||||| || || || |||||||| ||||| |||| ||| | ||||||| || Sbjct 762 ACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCT 703 Query 3827 GGCTATGATGTTGACGGCACCGACCAAAGCTCTCTCGGTCAGTTCTCCGGTCGTGTCCAG 3886 |||||||||||||| || || ||||||| || | || ||||| || |||||||| || Sbjct 702 GGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAA 643 Query 3887 CAGACGTTTAAGCATTCAGTACCGCGATTCTTCTGCCCTGAGCATGGCACTATGTTCACA 3946 ||||| | ||| ||||| || ||||| ||||| |||||||||||||||||||| || Sbjct 642 CAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACT 583 Query 3947 CTCGCATTGGTCCGCTTCCCGCCGACTC--ATGAAATGGAGATGCATTACTTAGTTGGTA 4004 || || | || || || ||||| ||| | ||| ||||| || ||| | | || Sbjct 582 CTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTACCTTAACGCTA 525 Query 4005 AAGAAGATTTGACTTATACTGATTTGGCTTGTGACCCTGCTTTG-ATGGCTAACTTGCCT 4063 ||| | |||||||||||| ||| | ||| | ||||||| |||| ||||| |||||||| Sbjct 524 AAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC-AACTTGCCG 466 Query 4064 CCTCGTGAGGTTAATATGTCTCAGTTCTTCCATTCTGGAAGTGCTAGTGCTAAGTTTAAG 4123 || ||||| || |||| | | |||| |||||| | | | ||||||||| Sbjct 465 CCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAG 406 Query 4124 ATCGCTGAAGGTCAGTGGTATCG-CATGCAGCCTGATCG--CGTTGCATTGCCGTATAAC 4180 || ||||| |||||||||||||| |||| |||| ||| ||| | | ||| || Sbjct 405 ATTGCTGAGGGTCAGTGGTATCGTTATGC-GCCT--TCGTATGTTTCTCCTGCTTATCAC 349 Query 4181 TATCTTGATGGTTTTCCGTTCTATAGCGCGATTCCGTCTGATGATATTAAGCAGCGCGTT 4240 |||||| || || || ||| | | || |||| |||| | | | ||||| Sbjct 348 CTTCTTGAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTA 289 Query 4241 CTGGTTAATACTGATAACTACGATGAGGTTTTCCAGTCTATGCAGCTTGCGCACTGGAAT 4300 || || || | || || || ||||||||| | ||| | ||| |||||| Sbjct 288 CTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAAT 229 Query 4301 ATGCAGACTAAGTTTAATTGCACCATTTATCGTAATATGCCGACCACTCGCGACTCTATT 4360 | ||| ||| |||||| ||| ||||||| ||| |||||||||||||||| || || Sbjct 228 AGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATC 169 Query 4361 ATGACCTCTTGAT 4373 ||||| || |||| Sbjct 168 ATGACTTCGTGAT 156 >seq173 Length=1356 Score = 165 bits (182), Expect = 3e-37 Identities = 278/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 1293 GGCTGGTTTTTCGTATTTGATACGTTGACACTTGCTGATGATCGTTTGCAGGCTTTTAAT 1352 || |||||| |||| ||||| || | || | ||||| || || || |||| ||| || Sbjct 1021 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 962 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 961 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 902 Query 1413 GAAGGTCGTTCGGTTAAGGATTCCTACAACGATTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || ||| ||||| || ||| ||||||| ||| |||||||||| ||| Sbjct 901 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 842 Query 1473 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCATGTTGTGCATATGGTGCGGACTCTTC 1530 | ||| |||| | || |||||||||| |||| ||||| | ||||||| |||| Sbjct 841 TATGGTA--CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 784 Query 1531 CTTTGGGAAGTTACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 783 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 725 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTACGCTATCAACAT 1649 | || | | |||||||||||| | || || || || || ||||| || Sbjct 724 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 665 Query 1650 GATGCTTATTCTCGCAAAGGTTGGTTGTGGCCTGTTGA 1687 || |||| ||| || |||||||||||||||||||| Sbjct 664 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 627 >seq49 Length=277 Score = 159 bits (176), Expect = 1e-35 Identities = 190/258 (74%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 3113 GAACGTATTCCTCACGACCTTTCTCATCTGGTTTTTGATGCAGGCAAAATTGGTCGTTTA 3172 || ||||| || || |||||||| ||||| | || ||| || | ||||||||| | Sbjct 276 GAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTT 217 Query 3173 AAGGTTGTTTCTTGGACTCCTGTTGTTGCAGGTGATTCTTTTGAGCTTGATATGATTGGC 3232 | |||| ||||| ||| | || || || || || ||| | || ||||| Sbjct 216 ATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGC 157 Query 3233 GCTATTCGCCTTTCCCCGCTTCGTCGTGGCCTTGCTGTTGACTCTCGTGTTGACCTGTTC 3292 ||| | || ||||| || | ||||||||||||||| |||||||| ||| ||| | || Sbjct 156 GCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTT 97 Query 3293 ACGTTTTATGTCCCTCATCGTCATGTATATGGTGAGCAGTGGATTGATTTTATGAAGCAA 3352 || |||||||||||||||||||| || |||||||| ||||||||| | || |||||| | Sbjct 96 ACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGAT 37 Query 3353 GGTGTTGATGCTGCTCCT 3370 |||||| |||| ||||| Sbjct 36 GGTGTTAATGCCACTCCT 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19302350272192