Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20vulgaris_20[genbank_20GCA_5F001077355.1_202015-01-29] 229 sequences; 1,504,784 total letters Query= NC_007856.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq173 883 0.0 seq15 464 2e-127 seq174 334 3e-88 seq49 172 2e-39 seq159 120 1e-23 >seq173 Length=1356 Score = 883 bits (978), Expect = 0.0 Identities = 997/1331 (75%), Gaps = 16/1331 (1%) Strand=Plus/Minus Query 468 TAATCGAAGAGTTAGACGAATGCTACAACGTGCTCGGACAACTTGATATTAATAACACTA 527 |||| || || || | |||||||||| |||||| |||||||||||||||||||||| Sbjct 1323 TAATGGATGAATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTA 1264 Query 528 TAGACCACAAACCTATCGGTAACGCCAAATGGGACTTAATGTATGAAAAACCTGTCTATA 587 |||||||| || || ||| |||||| ||| | | || || | || Sbjct 1263 TAGACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTT---- 1208 Query 588 AACACTGGTATG-----AACTGGTATCAAAACGACCCCTTAAATCAATCAGAGAGGACTA 642 || | | | || | |||| | |||| || ||||| || | || || || Sbjct 1207 -ACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTA 1149 Query 643 CAACTATGCAAAGGCTAAGGGTACTAAAGATGAGTGCTCGAAAATCCTTGAGGAATCCAC 702 || || | || || |||| ||| |||||||| || | | | || |||| ||||| Sbjct 1148 TAATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCAC 1089 Query 703 CATGAAATCCCGCCGTGGCTTTACCGTTCAGAGATTGATGAATGCTATGCGTACTGCCCA 762 |||||||| || | |||||| | ||||| | ||||||||||| ||||| || || Sbjct 1088 TATGAAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCA 1029 Query 763 CACTGATGGCTGGTATGTTGTATTCGATACTCTCACCTTAGCTGATGATCGTATTA-AGG 821 ||||||| |||| | | || || || |||||||| || ||||| || || |||| ||| Sbjct 1028 TGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCG-ATTAGAGG 970 Query 822 ACTTCTATGCTAACCCCAATGCTCTTCGTGACTATTTCCGTGATATTGGCCGTATGGTTC 881 || |||| ||| ||||||||| | ||||||||||| ||||||||||| |||||||||| Sbjct 969 CGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTC 910 Query 882 TCACTGCCGAGGGTCGTTCGGTCCATGATTCATCTTCGGACTGCTATCAGTACTTTTGTG 941 | ||||||||||||| || |||||||| | |||||||||||||| ||||||| Sbjct 909 TTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTG 850 Query 942 TGCCTGAGTATGGCACCCAGC--ATGGCCGTTTACACTTTCACGCAGTGCATCTTATGCG 999 ||||||||||||| || ||| |||||||| | || || || || ||||| ||||||| Sbjct 849 TGCCTGAGTATGGTAC--AGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCG 792 Query 1000 CACACTTCCTTTGGGTTCTCTCGACCCTAACTTTGGTAAGCTGGTGCGTACTAATCGGCA 1059 ||||||||| ||| | |||||||| |||||| | ||| || | | || || Sbjct 791 GACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCA 732 Query 1060 AATAAATAGCTTGCAAAACACATGGCCTTATGGTTACTCTATGCCCATCGCAGTCCGGTA 1119 |||||||||||||||| || ||||||||||||||| ||||||||||||||| || || Sbjct 731 GTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTA 672 Query 1120 TTCTCAGGATGCTTTCTCTCGCGCTGGATGGCTCTGGCCTGTCGATACAAAGGGTGAACC 1179 | ||||| ||||| || || |||| ||| | |||||||| ||| | || ||||| || Sbjct 671 CACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCC 612 Query 1180 CCTTAAATCCACCTCGTATATGGCTGTAGGCTTCTACGTTGCTAAATACGTTAATAAAAA 1239 |||||| | ||| ||||||||||| || ||||| || |||||||||||||| ||||| Sbjct 611 GCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAA 552 Query 1240 ATCTGATGTTGACATAGCCGCAAAAGGCTTAGGGAATCAAAAATGGAACGCTACATTAAA 1299 || ||| | ||| | || || ||||| |||| | || |||||||| || |||| Sbjct 551 GTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAA 492 Query 1300 AACGCAGATGGCTCTTTTACCAAAGAAACTATTTCGAATTCGAATGAGCCGCAACTTCGG 1359 ||| || || | || | || ||||| || || |||| ||||||||||||||||||| Sbjct 491 AACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGG 432 Query 1360 GATGAAACTACTCCCAATGACGACGCTGACCGCGGAGTGTTTAATCCAACTGACCCAAGT 1419 ||||||| | ||| ||||||| | ||| || ||||||| ||||||||||| ||| | | Sbjct 431 GATGAAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCT 372 Query 1420 GGGTTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAGCTACG 1479 ||||||||||| ||| ||||||||| | || |||||||||||||| || | |||| | | Sbjct 371 GGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAG 312 Query 1480 ATTGAGGCTGGCAAAGCAATCTGTAGCCGACGTTTTGGAGGCGCAACCTGTGACGACCAA 1539 ||||||||||| ||| |||||||||||||||||| |||||||||||||||||| || Sbjct 311 ATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAA 252 Query 1540 TCTGCTAAAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCCAGCCTACAGAGTTT 1599 |||||| ||||| |||||| || || || || || | |||| ||| |||||||| Sbjct 251 TCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCAGAGTTT 192 Query 1600 TATCGCTTCAATGACGCAGAAATTAGCAAATACGGATATTTCTGATGAAACTAAAAACTA 1659 ||||||||| ||||||||||| ||| || | |||||||||||||||| | ||||| || Sbjct 191 TATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTA 132 Query 1660 CGTTACTAATGCAGGAATTGCTGTTGCTGACTTACGACTTAAATCGAAGTGGACTGCTGG 1719 || ||| ||||||||| || |||| |||||| |||||||||||||||||||||| Sbjct 131 TCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGG 72 Query 1720 TGGAAAATGAAGAACTTCAATCTCAACTTAAAGAACTCGAGGGCGTCTTACTTCGCAACC 1779 ||||||||| || ||| | || ||| | |||||| |||||||| || ||| Sbjct 71 CGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACC 12 Query 1780 TTTCGCCATCA 1790 ||||||||||| Sbjct 11 TTTCGCCATCA 1 >seq15 Length=708 Score = 464 bits (514), Expect = 2e-127 Identities = 456/592 (77%), Gaps = 40/592 (7%) Strand=Plus/Minus Query 2009 TTTCAAACCGCTATTGCCTCCATCAAACTTATTCAGGCATCTTCTGTTCTTGACCTGACT 2068 || || |||||| | ||||| || || || |||||||| ||| | ||| | || | || Sbjct 594 TTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACC 535 Query 2069 GAGGACGATTTCGAATTCTTAACTCGTGACCGTGTATGGATTGCAACTGACCGCTCCCGT 2128 || || |||||||| || | || || || || |||||||| ||||||||||| ||| Sbjct 534 GAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGT 475 Query 2129 GCTCGCCGCGCTATTGAGGCTTGCGTTTATGGAACTCTGGACTTTGTGGGATACCCTCGC 2188 ||||| ||| ||||||||||||||||||| || ||||||||||| |||||||||||| Sbjct 474 GCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGC 415 Query 2189 TTTCCTGCTCCTATTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTTAAC 2248 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 414 TTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAAC 355 Query 2249 ATTCAAACGGCATGTCTTATTATGGAAGGCGCTGAATTCACCGAAAACATCATTAATGGT 2308 ||||||||||| ||||| || ||||||||||||||||| || |||||||| |||||||| Sbjct 354 ATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGC 295 Query 2309 GTCGATGCCCCGGTTAAAGCCGCTGAACTCTTCGCGTTTACCTTGCGTGTACGCGCCGGA 2368 ||||| |||||||||||||||||| | |||||||||||||||||||||||||| ||| Sbjct 294 GTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGA 235 Query 2369 AACACTGAGCTTATTACTTACGCAGAAAACAATGCGCGTGAAAAACTGCGCGCTCAAGGA 2428 |||||||| || ||||| |||||||| | || | |||| ||||| | || || ||||| Sbjct 234 AACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGA 175 Query 2429 GTGATG-GATGTC------TAAAAAATCTATTCGC---CGCTCTGGT------------- 2465 |||||| ||||| ||||||| | | || ||| ||||| Sbjct 174 GTGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGT 115 Query 2466 --------------GGCAAATCTAAAGGTGCTCGCCTCTGGTATGTTGGCGGCACACAAT 2511 ||||| |||||| ||||| || |||||||| || || ||||| Sbjct 114 TGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAAT 55 Query 2512 TCTAATCTCTAAGGGGCTTCGGCCCCTCTATTTAAGGATACAAAATGTCTAA 2563 | |||| | |||||||||||||||| || || |||||| | |||||||| Sbjct 54 TTTAATTGC--AGGGGCTTCGGCCCCT-TACTTGAGGATAAATTATGTCTAA 6 >seq174 Length=946 Score = 334 bits (370), Expect = 3e-88 Identities = 605/874 (69%), Gaps = 38/874 (4%) Strand=Plus/Minus Query 3118 CTACCAC---TATCGATATTATGGGCCTACAAGCTGCCTATGCTAAACTCCACACTGAAC 3174 ||||||| ||| || |||||||| || |||||||| |||||||| | || ||||| | Sbjct 881 CTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACC 822 Query 3175 AGGAACGTGACTATTTCATGACTCGCTACCGCGATATTATGAAAGACTTTGGCGGTCACA 3234 | |||||||| || |||||| || |||| ||| |||| ||||| ||| | | Sbjct 821 AAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAA 762 Query 3235 CCTCCTACGACGGTGATAACCGTCCTCTGCTCCTGATGCGCTCTGAATTTTGGGCCTCTG 3294 |||| || |||| ||| ||||||||| | || | ||||||||| | | ||||| |||| Sbjct 761 CCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTG 702 Query 3295 GCTATGACGTCGACGGTACTGACCAAACTTCATTGGGTCAGTTCTCTGGTCGCGTCCAAC 3354 ||||||| || || || ||||||||||| || || || ||||| |||||||| || |||| Sbjct 701 GCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAAC 642 Query 3355 AAACCTTTAATCATAAAGTGCCTCGCTTCTATGTTCCTGAGCATGGCGTAATTATGACTT 3414 | |||| ||| ||| ||||| || |||| |||||||||||||||| || | ||| Sbjct 641 AGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTC 582 Query 3415 TATCTGTTACTCGCTTCCCTCCTACT--CACGAAATGGAAATGCACTATCTCGTCGGTAA 3472 | | || ||| || || |||||| || ||| || || || || || || ||| Sbjct 581 TTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTACCTTAACGCTAA 524 Query 3473 GGAATCTCTGACTTATACTGACATTGCCTGTGACCCTGCTCT-TATGGCTAACCTGCCTC 3531 | || |||||||||| || ||||| | ||||||| | | |||||| ||| |||| | Sbjct 523 AGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC-AACTTGCCGC 465 Query 3532 CGCGTGAAATTGAGGTAAAAGACCTCTTTCACTCTGCTGGT---ACTGGTAAATTCAAAA 3588 ||||||||||| | || || | || | |||| || | || || || || | Sbjct 464 CGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGA 405 Query 3589 TTGCCGAAGGTCAATGGTATCGTACTCAGCCTGACCGCGTTGCCTTCC--CTTATAACGC 3646 |||| || ||||| ||||||||| | |||| ||| | ||| ||||| || Sbjct 404 TTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTC--TCCTGCTTATCACCT 347 Query 3647 TCTTGACGGCTTCCCTTTCTATTC-TGAACTGCCGTCTAATGATATTCTCGAACGTGTAC 3705 |||||| |||||||| ||| |||| |||| ||| ||| |||| | | ||||| |||| Sbjct 346 TCTTGAAGGCTTCCCATTC-ATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTAC 288 Query 3706 TTGTTCGAACTGATAACTATGATGAAATCTTCCAGTCTATGCAACTTGCACACTGGAACA 3765 || |||| || | ||||| | |||||||| | || | || ||||| | Sbjct 287 TTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATA 228 Query 3766 TGCAAACTAAATTTAACACTACTGTATATCGTCATATGCCTACCACTCGTGATGGCATCA 3825 || ||||||||| || || ||||| || |||| |||||||| ||| |||| Sbjct 227 GTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCA 168 Query 3826 TGA---CGTCATAAAA---------------CAAAACGTTGAACGGGTACAAATTTTAAT 3867 ||| ||| |||||| | |||| ||| |||| |||||||||| Sbjct 167 TGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAACGCCGAAGCGGTAAAAATTTTAAT 108 Query 3868 TTGTGCCTGTTCAAGGTTGAACAAGCGAAGCGCGTTAGCTAACTTACTTAAGGAAATT-C 3926 || |||| | |||||| ||||||||||||| ||| | | ||| |||| || Sbjct 107 TTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGCTT-AGGAGTTTAA 49 Query 3927 TCATGTTTCAAACTTATCTCTCTAAACATAATTC 3960 |||||||||| |||| | | ||| |||||||| Sbjct 48 TCATGTTTCAGACTTTTATTTCTCGCCATAATTC 15 >seq49 Length=277 Score = 172 bits (190), Expect = 2e-39 Identities = 194/260 (75%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 2580 GAACGTATTCCGCATGACCTCTCACATCTGGTATTCGAAGCTGGTAAAATCGGACGCCTT 2639 || ||||| ||||||||||| || ||||| | ||| |||||| | || || || ||| Sbjct 276 GAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTT 217 Query 2640 AAAACTATCTCCTGGACTCCTGTTGTCGCTGGTGATTCTTACGAAACTGAAATGGTAGGC 2699 | || || || ||||| ||| ||||||| || || | ||| | || || ||| Sbjct 216 ATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGC 157 Query 2700 GCTATTCGTCTTTCTCCTCTCCGTCGTGGTCTGGCTGTCGACTCTCGCGTCGACGTCTTT 2759 ||| | ||||||||||| | |||||||| || ||| | |||||| || ||| | ||| Sbjct 156 GCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTT 97 Query 2760 ACTTTCTATATCCCTCATCGTCATGTCTATGGTCAACAATGGATTGACTTTATGAAGACT 2819 ||||| ||| ||||||||||||| || |||||| |||| |||||| | || |||||| | Sbjct 96 ACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGAT 37 Query 2820 GGCGTTAACGCTACTCCTCT 2839 || ||||| || |||||||| Sbjct 36 GGTGTTAATGCCACTCCTCT 17 >seq159 Length=903 Score = 120 bits (132), Expect = 1e-23 Identities = 328/492 (67%), Gaps = 29/492 (6%) Strand=Plus/Minus Query 4445 CTCCAACCTCTTAAATAAGGTCTAATCTATGTTCGGTGCAATCGCTGGCGGTATCGCCTC 4504 ||||| || ||||| | |||| || |||||| ||||| || ||||||||||| || || Sbjct 499 CTCCAGCCACTTAAGTGAGGTG--ATTTATGTTTGGTGCTATTGCTGGCGGTATTGCTTC 442 Query 4505 CTCTCTCGCTGGTGGACTCCTGAACAAAGCATTCGGGGGCGGTTCTTCCGCTCCCCAATC 4564 |||| |||||||| | || ||| || || |||||| || || Sbjct 441 TGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTCAAAAAGCCGCCTCCGG 382 Query 4565 TGGCGTTCAAGGTAATGTCCTCGCTACTGA---CAATAATGTA---ATCGGTGCTAATGA 4618 |||| |||||||| |||| || ||||| || ||||| |||| || |||| | Sbjct 381 TGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAGGCATGGGTG------A 328 Query 4619 TGCTGGTATCAAATCCGCTATTCAGGGTTCTAATCCTCCCAATGGTCAACAAGCTGCTCC 4678 ||||||||| ||||| || ||||| || |||||| ||| || | | | || | || Sbjct 327 TGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAGGCCGTCCC 268 Query 4679 CAATGCTATATCGGGCGTTCTTGCCGATACTGGCAAAG-ACGCCCT--ATCTTCAAT-CA 4734 | | | | || || | | | || | |||| |||| || | | | | | | || Sbjct 267 TAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCA 208 Query 4735 --CTGGCGCT---GGCGTTA---ATAAACTTATGGAAAAAATCGGACTCTCTA--AAGA- 4783 ||||| || | |||| |||| | | || | ||||| | ||| Sbjct 207 GGCTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTC 148 Query 4784 TGCTGCTGCTAAAGGTAAGGATACGAAAGATTATCTTGCTTCTGCGTTCCCCGAACTCAA 4843 ||| |||| |||||| |||||||| |||||||||||| |||| || || || || || Sbjct 147 TGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAA 88 Query 4844 CCCGTGGGAACGTGCTGGCGCTGGTGCTTCTTCTGCTGGAATGGTTGATGCGGGATTCCA 4903 | ||||| |||||||| |||| |||||| |||||||| |||||||| || ||||| | Sbjct 87 TGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGA 28 Query 4904 AAACCAAAAGGA 4915 || ||||| || Sbjct 27 GAATCAAAAAGA 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17443156310235