Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20vulgaris_20[genbank_20GCA_5F001077355.1_202015-01-29] 229 sequences; 1,504,784 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq15 370 4e-99 seq174 327 4e-86 seq49 192 2e-45 seq173 178 5e-41 >seq15 Length=708 Score = 370 bits (410), Expect = 4e-99 Identities = 318/393 (81%), Gaps = 0/393 (0%) Strand=Plus/Minus Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616 |||||||| || ||| ||||| | || || || |||||||| || ||||| || | | Sbjct 563 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 504 Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676 | |||||||||| || |||||| ||||| |||||||| || |||||||| ||||||| Sbjct 503 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 444 Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736 | ||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 443 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 384 Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCG 2796 |||||||||||||||||||||||||||||||||| || || || ||| | |||||||||| Sbjct 383 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 324 Query 2797 CGGAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAACGCCGCTGAGCTCT 2856 | || |||| ||||||||||||||||||||||||||||||||||| |||||||| | | Sbjct 323 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 264 Query 2857 TCGCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAGGAAA 2916 |||||| ||| ||||| | |||||| || || | | | ||| || || |||| Sbjct 263 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAA 204 Query 2917 ATGCTCGTCAGAAATTACGCGCAAATGGACTGA 2949 | | ||||| |||||||| ||| | ||| ||| Sbjct 203 ACGTGCGTCAAAAATTACGTGCAGAAGGAGTGA 171 >seq174 Length=946 Score = 327 bits (362), Expect = 4e-86 Identities = 557/804 (69%), Gaps = 14/804 (2%) Strand=Plus/Minus Query 3560 TCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAAGCTCGCTGAGCAAATGGG 3619 ||| |||| |||||| ||||||| |||||||| || ||| |||| || |||||| Sbjct 946 TCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGAC 887 Query 3620 CATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGCCGCTTATGCGCAGCTTCATAC 3679 | | | || || ||||| ||||||||| |||| || |||||||| | | ||||| Sbjct 886 GACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATAC 827 Query 3680 TGAGCAGGAGCGTACTTATTTCATGCAGCGTTATCGTGATGTTATCTCCAGCTTTGGCGG 3739 ||| || || ||| ||| |||||||||||||| | ||||||||| || ||||| || Sbjct 826 TGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGG 767 Query 3740 TTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCACACCGATTTCTGGGC 3799 | |||||| ||||| || || ||||| || || ||||| |||| | | || ||||||| Sbjct 766 TAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGC 707 Query 3800 TTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTCGGACAGTTTTCGGGTCGAGT 3859 || || || || ||||| || || |||||| | || | || |||||||| ||||| || Sbjct 706 ATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGT 647 Query 3860 CCAACAGACGTTTAAACACTCAGTGCCTCGATTCTTCGTGCCGGAGCATGGTGTCATGAT 3919 |||||||| | |||||| || ||||| || ||||| || || |||||||| ||| | Sbjct 646 TCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTT 587 Query 3920 GACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTTGGAGCATCATTATCTTGTTGG 3979 ||| | ||| ||||| || ||||||| || ||| ||| || ||| | Sbjct 586 TACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGC 527 Query 3980 TCGTAATAATTTGACTTATACCGACCTTGCGGGTGACCCGGCTTTGATTGGTAATTTGCC 4039 | | ||||||||||||||| |||| || ||||| | |||| ||| || ||||| Sbjct 526 TAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCC 467 Query 4040 GCCACGTGAGATTTCTTATCAGGATCTTTTCCGTGATGGTCGTCCGGGCATTAAGATTAA 4099 ||| ||||| |||||| ||||| |||||||| |||| | || | ||| |||| Sbjct 466 GCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAA 407 Query 4100 GGTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTATGTTAACTAC-AAGTATCAGT 4158 | |||| ||| | ||||||||| | || |||||| || | ||||| Sbjct 406 GATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTT-TCTCCTGCTTATCACC 348 Query 4159 TACTTGAAGGTTTTCCGTTCCTTGATGATGCGCCCGGTACGACTAGTGGTGATGACCTTC 4218 | |||||||| || || ||| || | || ||| || ||||||| | Sbjct 347 TTCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTGATTTGC--A 299 Query 4219 AGAAGGCTATTCTCATTGACCATAATGACTATAATGCCTGTTTCCAGTCTCAGCAGTTGC 4278 |||| || | || ||| ||| |||| ||| | ||||||||||| |||||| Sbjct 298 AGAACGC-GTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGT 240 Query 4279 TTCAGTGGAATAATCAGGCTCGTTATAATGTCAATGTTTATCGTCATATTCCTACTGTTC 4338 | |||||||||| ||||| | | |||||| | |||||||| || | || || || Sbjct 239 TGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTC 180 Query 4339 GTGATTCTATTATGACCTCTTGAT 4362 | ||||| || ||||| || |||| Sbjct 179 GCGATTCAATCATGACTTCGTGAT 156 >seq49 Length=277 Score = 192 bits (212), Expect = 2e-45 Identities = 200/259 (77%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 3104 TGACCTTTCTCATCTTGCCTT--TGACTGTGGCATGATTGGTCGTTTGAAAACTGTTTCA 3161 ||||||||| ||||||| ||| | ||| | || |||||||||| | | || ||||| Sbjct 262 TGACCTTTCCCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCA 205 Query 3162 TGGACTCCTGTTATTGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGCGCTTTGCGTCTT 3221 ||||| ||||| |||||||| ||||| ||| | || || ||||||||| | |||||| Sbjct 204 ACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTT 145 Query 3222 TCTCCTCTGCGTCGTGGTTTAGCTATTGACTCTAAGGTTGATTTTTTCACTTTCTATATT 3281 ||||| |||||||||| | ||||||||||||| || || |||| ||||| ||| | Sbjct 144 TCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTC 85 Query 3282 CCGCATCGCCATGTTTATGGTGACCAGTGGATTCAATTTATGCGTGATGGTGTTGATGCC 3341 || ||||| || ||||||||||| ||||||||| | || ||| ||||||||| ||||| Sbjct 84 CCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCC 25 Query 3342 GCACCACTCCCTTCCGTTA 3360 | || ||||| | |||| Sbjct 24 ACTCCTCTCCCGACTGTTA 6 >seq173 Length=1356 Score = 178 bits (196), Expect = 5e-41 Identities = 281/398 (71%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 1292 GGCTGGTTCTTTGTATTTGATACACTGACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1351 || ||||| | || ||||| || || || | ||||| ||||| || |||| ||| || Sbjct 1021 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 962 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 961 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 902 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGTTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 901 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 842 Query 1472 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 841 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 784 Query 1530 CTTTGGGAAGTCACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 783 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 725 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1648 | || | | |||||| ||||| | || || || || |||||||| || Sbjct 724 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 665 Query 1649 GACGCTTATTCTCGTAAAGGTTGGCTGTGGCCTGTTGA 1686 ||||||| ||| ||| |||||| ||||||||||||| Sbjct 664 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19385550057848