Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12- 03] 2,182 sequences; 508,550,595 total letters Query= NC_016998.1 Length=2675 Score E Sequences producing significant alignments: (Bits) Value seq30 95.1 2e-16 seq882 89.7 9e-15 >seq30 Length=1365002 Score = 95.1 bits (104), Expect = 2e-16 Identities = 172/248 (69%), Gaps = 14/248 (6%) Strand=Plus/Minus Query 2267 ATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAACAATCTCTGATTT 2326 |||| | ||||||| |||| |||||||||| ||| ||||||||||| ||||| |||| | Sbjct 228682 ATGTATTGATGGAAGTGTGTTGACCTGGTTCTGGACACCAAGTCGAAGAATCTTTGATCT 228623 Query 2327 GTGATCTGTGCTTTG---CCTTCGAG---TTGGATAAGCACGTGGAGATGAGGTTGCCCA 2380 |||| || | | | | | ||| | || |||||||| |||||| ||| Sbjct 228622 ------TGTGTTTCGAAACGGTAGGGAAATTGAAGCAGACAGTGGAGATAAGGTTGGCCA 228569 Query 2381 TCTTCGTGTAACTCTCGGCAGATTTTGATGTATTTCTTATTTGATG-GAAGAGA-TAGGG 2438 || ||||| | || | | | | |||| | | | | | | | || ||||| Sbjct 228568 TCCTCGTGCAGTTCAGAGGACACTCGTATGTGTATGAGGGTGGTCGTGTTGTGAATAGGG 228509 Query 2439 TTTGTAATTGGGAAAGTGCTGCTTCTTTCGAAATAGAGCACTGTGGATATGTGAGAAATA 2498 || | ||||||||||||| |||| ||||||| ||| ||||| | |||||||| |||| Sbjct 228508 ATTTAAGTTGGGAAAGTGCTTCTTCCTTCGAAAGAGAACACTGGTGGTATGTGAGGAATA 228449 Query 2499 TATTTTTG 2506 |||||||| Sbjct 228448 TATTTTTG 228441 >seq882 Length=164761 Score = 89.7 bits (98), Expect = 9e-15 Identities = 170/247 (69%), Gaps = 14/247 (6%) Strand=Plus/Plus Query 2267 ATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAACAATCTCTGATTT 2326 |||| | ||||||| |||| ||||||| || ||| ||||||||||| ||||| |||| | Sbjct 58138 ATGTATTGATGGAAGTGTGTTGACCTGATTCTGGACACCAAGTCGAAGAATCTTTGATCT 58197 Query 2327 GTGATCTGTGCTTTG---CCTTCGAG---TTGGATAAGCACGTGGAGATGAGGTTGCCCA 2380 |||| || | | | | | ||| | || |||||||| |||||| ||| Sbjct 58198 ------TGTGTTTCGAAACGGTAGGGAAATTGAAGCAGACAGTGGAGATAAGGTTGGCCA 58251 Query 2381 TCTTCGTGTAACTCTCGGCAGATTTTGATGTATTTCT-TATTTGATGGAAGAGATAGGGT 2439 || ||||| | || | | | | |||||| | | | || |||||| Sbjct 58252 TCCTCGTGCAGTTCAGAGTACACTCGTATGTATGAGGGTGGTCGCGTTGTGA-ATAGGGA 58310 Query 2440 TTGTAATTGGGAAAGTGCTGCTTCTTTCGAAATAGAGCACTGTGGATATGTGAGAAATAT 2499 || | ||||||||||||| |||| ||||||| ||| ||||| | |||||||| ||||| Sbjct 58311 TTTAAGTTGGGAAAGTGCTTCTTCCTTCGAAAGAGAACACTGGTGGTATGTGAGGAATAT 58370 Query 2500 ATTTTTG 2506 ||||||| Sbjct 58371 ATTTTTG 58377 Score = 89.7 bits (98), Expect = 9e-15 Identities = 170/247 (69%), Gaps = 14/247 (6%) Strand=Plus/Minus Query 2267 ATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAACAATCTCTGATTT 2326 |||| | ||||||| |||| ||||||| || ||| ||||||||||| ||||| |||| | Sbjct 100546 ATGTATTGATGGAAGTGTGTTGACCTGATTCTGGACACCAAGTCGAAGAATCTTTGATCT 100487 Query 2327 GTGATCTGTGCTTTG---CCTTCGAG---TTGGATAAGCACGTGGAGATGAGGTTGCCCA 2380 |||| || | | | | | ||| | || |||||||| |||||| ||| Sbjct 100486 ------TGTGTTTCGAAACGGTAGGGAAATTGAAGCAGACAGTGGAGATAAGGTTGGCCA 100433 Query 2381 TCTTCGTGTAACTCTCGGCAGATTTTGATGTATTTCT-TATTTGATGGAAGAGATAGGGT 2439 || ||||| | || | | | | |||||| | | | || |||||| Sbjct 100432 TCCTCGTGCAGTTCAGAGTACACTCGTATGTATGAGGGTGGTCGCGTTGTGA-ATAGGGA 100374 Query 2440 TTGTAATTGGGAAAGTGCTGCTTCTTTCGAAATAGAGCACTGTGGATATGTGAGAAATAT 2499 || | ||||||||||||| |||| ||||||| ||| ||||| | |||||||| ||||| Sbjct 100373 TTTAAGTTGGGAAAGTGCTTCTTCCTTCGAAAGAGAACACTGGTGGTATGTGAGGAATAT 100314 Query 2500 ATTTTTG 2506 ||||||| Sbjct 100313 ATTTTTG 100307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8451004069492