Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrus_20x_20bretschneideri_20[refseq_20GCF_5F000315295.1_202012-12-
03] 2,182 sequences; 508,550,595 total letters
Query= NC_016998.1
Length=2675
Score E
Sequences producing significant alignments: (Bits) Value
seq30 95.1 2e-16
seq882 89.7 9e-15
>seq30
Length=1365002
Score = 95.1 bits (104), Expect = 2e-16
Identities = 172/248 (69%), Gaps = 14/248 (6%)
Strand=Plus/Minus
Query 2267 ATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAACAATCTCTGATTT 2326
|||| | ||||||| |||| |||||||||| ||| ||||||||||| ||||| |||| |
Sbjct 228682 ATGTATTGATGGAAGTGTGTTGACCTGGTTCTGGACACCAAGTCGAAGAATCTTTGATCT 228623
Query 2327 GTGATCTGTGCTTTG---CCTTCGAG---TTGGATAAGCACGTGGAGATGAGGTTGCCCA 2380
|||| || | | | | | ||| | || |||||||| |||||| |||
Sbjct 228622 ------TGTGTTTCGAAACGGTAGGGAAATTGAAGCAGACAGTGGAGATAAGGTTGGCCA 228569
Query 2381 TCTTCGTGTAACTCTCGGCAGATTTTGATGTATTTCTTATTTGATG-GAAGAGA-TAGGG 2438
|| ||||| | || | | | | |||| | | | | | | | || |||||
Sbjct 228568 TCCTCGTGCAGTTCAGAGGACACTCGTATGTGTATGAGGGTGGTCGTGTTGTGAATAGGG 228509
Query 2439 TTTGTAATTGGGAAAGTGCTGCTTCTTTCGAAATAGAGCACTGTGGATATGTGAGAAATA 2498
|| | ||||||||||||| |||| ||||||| ||| ||||| | |||||||| ||||
Sbjct 228508 ATTTAAGTTGGGAAAGTGCTTCTTCCTTCGAAAGAGAACACTGGTGGTATGTGAGGAATA 228449
Query 2499 TATTTTTG 2506
||||||||
Sbjct 228448 TATTTTTG 228441
>seq882
Length=164761
Score = 89.7 bits (98), Expect = 9e-15
Identities = 170/247 (69%), Gaps = 14/247 (6%)
Strand=Plus/Plus
Query 2267 ATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAACAATCTCTGATTT 2326
|||| | ||||||| |||| ||||||| || ||| ||||||||||| ||||| |||| |
Sbjct 58138 ATGTATTGATGGAAGTGTGTTGACCTGATTCTGGACACCAAGTCGAAGAATCTTTGATCT 58197
Query 2327 GTGATCTGTGCTTTG---CCTTCGAG---TTGGATAAGCACGTGGAGATGAGGTTGCCCA 2380
|||| || | | | | | ||| | || |||||||| |||||| |||
Sbjct 58198 ------TGTGTTTCGAAACGGTAGGGAAATTGAAGCAGACAGTGGAGATAAGGTTGGCCA 58251
Query 2381 TCTTCGTGTAACTCTCGGCAGATTTTGATGTATTTCT-TATTTGATGGAAGAGATAGGGT 2439
|| ||||| | || | | | | |||||| | | | || ||||||
Sbjct 58252 TCCTCGTGCAGTTCAGAGTACACTCGTATGTATGAGGGTGGTCGCGTTGTGA-ATAGGGA 58310
Query 2440 TTGTAATTGGGAAAGTGCTGCTTCTTTCGAAATAGAGCACTGTGGATATGTGAGAAATAT 2499
|| | ||||||||||||| |||| ||||||| ||| ||||| | |||||||| |||||
Sbjct 58311 TTTAAGTTGGGAAAGTGCTTCTTCCTTCGAAAGAGAACACTGGTGGTATGTGAGGAATAT 58370
Query 2500 ATTTTTG 2506
|||||||
Sbjct 58371 ATTTTTG 58377
Score = 89.7 bits (98), Expect = 9e-15
Identities = 170/247 (69%), Gaps = 14/247 (6%)
Strand=Plus/Minus
Query 2267 ATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAACAATCTCTGATTT 2326
|||| | ||||||| |||| ||||||| || ||| ||||||||||| ||||| |||| |
Sbjct 100546 ATGTATTGATGGAAGTGTGTTGACCTGATTCTGGACACCAAGTCGAAGAATCTTTGATCT 100487
Query 2327 GTGATCTGTGCTTTG---CCTTCGAG---TTGGATAAGCACGTGGAGATGAGGTTGCCCA 2380
|||| || | | | | | ||| | || |||||||| |||||| |||
Sbjct 100486 ------TGTGTTTCGAAACGGTAGGGAAATTGAAGCAGACAGTGGAGATAAGGTTGGCCA 100433
Query 2381 TCTTCGTGTAACTCTCGGCAGATTTTGATGTATTTCT-TATTTGATGGAAGAGATAGGGT 2439
|| ||||| | || | | | | |||||| | | | || ||||||
Sbjct 100432 TCCTCGTGCAGTTCAGAGTACACTCGTATGTATGAGGGTGGTCGCGTTGTGA-ATAGGGA 100374
Query 2440 TTGTAATTGGGAAAGTGCTGCTTCTTTCGAAATAGAGCACTGTGGATATGTGAGAAATAT 2499
|| | ||||||||||||| |||| ||||||| ||| ||||| | |||||||| |||||
Sbjct 100373 TTTAAGTTGGGAAAGTGCTTCTTCCTTCGAAAGAGAACACTGGTGGTATGTGAGGAATAT 100314
Query 2500 ATTTTTG 2506
|||||||
Sbjct 100313 ATTTTTG 100307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8451004069492
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |