Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_001412.1 Length=2994 Score E Sequences producing significant alignments: (Bits) Value seq941 358 1e-95 >seq941 Length=10723577 Score = 358 bits (396), Expect = 1e-95 Identities = 607/868 (70%), Gaps = 25/868 (3%) Strand=Plus/Minus Query 600 CTGACCCTAGAAGAAGGCGAGGTCTTTCGTCAATTCCAGAAGGAAGTGAAGAAGCTACTG 659 ||||| | ||||| || ||| ||| ||||||||||||| |||||||| ||||| Sbjct 3598934 CTGACTTTGGAAGACGGGGAGCGCTTCATCCAATTCCAGAAGGGTGTGAAGAAAATACTG 3598875 Query 660 AGGTGTAAGGTTAATTTTCATAGGAAGTGTTCGTTGTATGAGGAAATATACAAGAAATAC 719 || ||| ||| | || || |||| | |||||| | ||| | |||| || || Sbjct 3598874 CGGGCGAAGTGTAAGTATCGTACGAAGGTTGAGTTGTACGCGGAGCTGTACAGTAAGTAT 3598815 Query 720 GTATACAATGTCCCAGAAAAGAAAGGTGAATCCTCA-AAGTGCGTGGCCGAAG---AAGA 775 | || |||| |||||||||| |||| | | ||| ||| || ||||| || | Sbjct 3598814 GGCC-CA--GTCCAGGAAAAGAAAGTGGAATGCACCGAAGAGCG-GGACGAAGCGGAAAA 3598759 Query 776 GGAGGACTAGTACGACTTCGAGGA-----AATACCAATGGAGGAGACCTGTGACAAAAAA 830 || |||| | | | | |||| ||||| | | | || | || | | | Sbjct 3598758 AGACGACTGGGAAAAGCTATAGGAGCCGGAATAC--AGGTAAAAGGGCGGTCAAACCTGA 3598701 Query 831 CAGGACTCTGAAGTTAAAGATGTATGATGATATGTTGGGTGCTGGTGGTATAGGATCTAC 890 | | || | ||||||||| || |||||| | || |||| | ||| | |||||||| Sbjct 3598700 CCGTGCTTTAAAGTTAAAGTATTACGATGATTTCTTCGGTGGTTCTGGAGTTGGATCTAC 3598641 Query 891 CATTAGTAATAATGGTATGATTACTATGTTGAATAATTATGTCCAGGGTATTGGTGATAG 950 || |||||| |||||||||| || ||| ||||||||||||| || ||| | || || || Sbjct 3598640 TATCAGTAATGATGGTATGATCACGATGGTGAATAATTATGTTCACGGTCTCGGGGACAG 3598581 Query 951 TCAGAGAGCGAAGAACGTTACTGTGACGAAGCATTTGAAGTTTGATATGGCTCTTATGGG 1010 ||| | | | ||||| || || || ||||||||| | |||||||| | ||||| Sbjct 3598580 TCAACGGTCAAGTAACGTGACCGTTACACGACATTTGAAGATGGATATGGCATTGATGGG 3598521 Query 1011 GAGTTCTCAGTTCTGGGAGACTCCTAATTATATGACCCAATATCATTGGATTATCATAGA 1070 ||||| | |||||| || ||||||||||||||| |||||||||||| |||| | || Sbjct 3598520 AAGTTCAAAATTCTGGATGAGTCCTAATTATATGACGCAATATCATTGGCTTATTGTCGA 3598461 Query 1071 CAAGGATGTTGGGTCAGTGTTTCCTACTAAG--TTATCGAGTATATTTGATATTCCCGAT 1128 | ||| || || | |||||| || || | | |||| |||||||||||||| | Sbjct 3598460 CCGGGACGTGGGTGCTACATTTCCT-CTTAGCCTGAGCGAG-ATATTTGATATTCCGTCT 3598403 Query 1129 AACGGTCAGGCTATGCCGTCTACTTATCGTATTCGAAGAGATATGAACGAGAGGTTTATT 1188 || ||| || ||||| ||||||||||| || || ||| || ||| | || || Sbjct 3598402 GGTGGACAGACTGCTCCGTCCACTTATCGTATCCGCAGGGATTGTAATGAGCGTTTCATC 3598343 Query 1189 GGGAAGAAGAAATGGAGAACTCATTGGATGTCTACTGGTACTGGATATGGAGGGAA---G 1245 | |||| ||||| ||||||| |||||| || ||| ||| ||||| | Sbjct 3598342 GTCAAGAGACGATGGACGACTCATTTGATGTCAACAGGTTGCCCTTAT---GGGAATTCG 3598286 Query 1246 GAGACTTACAAGGCTCCTTCAATGCCAAATTACAAGAAACCGATGAATATCAATGTGCGC 1305 ||||| || ||||| || || ||||| ||||||||||| | |||||| |||| | || Sbjct 3598285 GAGACGTATAAGGCACCGTCGATGCCGAATTACAAGAAGGCTATGAATCTCAACATTCGG 3598226 Query 1306 AATTTGAACATGAGGACTATTTGGAAAGACACCGGTGGTGGGAAGTATGAAGACGTGAAG 1365 ||| | || | | ||| | ||||| || || |||||||| ||||| || ||||| ||| Sbjct 3598225 AATATCAATGTCAAGACCTTGTGGAAGGATACGGGTGGTGGAAAGTACGAGGACGTTAAG 3598166 Query 1366 GAGAATGCTTTACTCTATGTTGTTGTTAATGATAATACGGATAATACTAATATGTATGCC 1425 |||||||| |||| ||||| ||||| |||||||| | || | ||| || ||||| || Sbjct 3598165 GAGAATGCGATACTGTATGTAGTTGTCAATGATAACAGCGACAGTACGAACATGTACGCT 3598106 Query 1426 ACATTATTTGGCAATTGTAGATGCTATT 1453 | |||||||| ||||||||||| |||| Sbjct 3598105 ATGTTATTTGGAAATTGTAGATGTTATT 3598078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9468698609865