Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_010417.1 Length=2845 Score E Sequences producing significant alignments: (Bits) Value seq941 688 0.0 >seq941 Length=10723577 Score = 688 bits (762), Expect = 0.0 Identities = 798/1061 (75%), Gaps = 24/1061 (2%) Strand=Plus/Minus Query 1517 TAATATACATCGCAATTAGCGTAAAACCAATCTTTCATAGATTCACTCATACAAGGTATC 1576 ||||| || || ||||| || || |||||||| ||||| |||||||||| |||||||| Sbjct 3597819 TAATAGACCTCACAATTGGCATAGAACCAATCGCGCATAGCTTCACTCATAGAAGGTATC 3597760 Query 1577 CAGTCCATATCTGGATTAGTAATAGCAATACAAGGTCTTCCGCCTTGAATGACTAAGTTT 1636 || |||||||||||||| |||||||| || || |||| ||||| |||| ||| || Sbjct 3597759 CAATCCATATCTGGATTGGTAATAGCTATGCAGGGTCGGCCGCCCGGAATAGTTAAATTA 3597700 Query 1637 GGTTTATGTTTTATCCAAACACTATAATCTTCGTTACATCCGATAATAGATTTAAACAAC 1696 || |||| || |||||||| ||||| ||||||||||| || |||||||||||||| | Sbjct 3597699 GGCCTATGCTTAATCCAAACGCTATAGTCTTCGTTACAACCTATAATAGATTTAAAGAGT 3597640 Query 1697 TCCTGTTGTATTTTTTGATAGCGGATATCGTCTATTATATGGTATGTAGTGTGGTCTATA 1756 ||||| || ||||| || || || || || ||||| | || || | || | |||||| Sbjct 3597639 TCCTGCTGAATTTTCTGGTATCGAATGTCATCTATGACGTGATAGGCCGTATTGTCTATG 3597580 Query 1757 TCGTATAGAGACCAATCTAATACCATGCCAGACATATAGTGGTGTCGGCCTAGAGATCTT 1816 || || |||||||| | |||||| |||||||| || || || || |||| |||| Sbjct 3597579 TCATAGGTGGACCAATCGAGTACCATTCCAGACATGTAATGATGCCGTCCTAATGATCGG 3597520 Query 1817 GCCCACTGGGTCTTTCCTGTTCTGGAGGGTCCGCATATGTAGAGACTTCTTGGTCGGACT 1876 ||||| || ||||| || ||||| || || ||||| |||||||| |||| ||||||||| Sbjct 3597519 GCCCATTGAGTCTTGCCGGTTCTTGATGGGCCGCAGATGTAGAGGCTTCGTGGTCGGACG 3597460 Query 1877 GGTCTGTTGTCTGGCTCCTGGACAAATTAAGTACGTTAGTGTCTTCACTACATGCTAG-- 1934 || |||||||| || ||||| | | || | | |||| | || ||||| | Sbjct 3597459 GGCCTGTTGTCGGGTTCCTGAAGGCAATAGATTCATTAGGAACGTC----CATGCAACGT 3597404 Query 1935 ATCGCCACTAAGTCG--ATCTAGGTGGAAGTATTCTTCAA-GAGTCATTTGTCTGTCTTG 1991 || || || | ||||| | | | ||||| || | | ||| | | || | Sbjct 3597403 ATGGCGTTGTAGGCTGTATCTAATTCATAATGTTCTTGAATGCCTAATTCTTGTTCCTGG 3597344 Query 1992 AAGAATTGCTCCCCTGCAATTCTCACATATTTCGTA-ATGTAAACAATCTGAACTTACGA 2050 || || || | ||||| | ||||| ||| || ||| || || | |||||||| Sbjct 3597343 AA-AACAGCGTTTCGGCAATCATGACATAATTCATACATG-AAGCATGTTTGACTTACGA 3597286 Query 2051 AATATATATTTTGTTCCGCCCACTCTTTGATTGTGTCAGGTAGCCTAGAGAACTCCGTCC 2110 || ||||||| ||||||||||||||||||| | |||||||| || | ||| ||||||| Sbjct 3597285 AAAATATATTGTGTTCCGCCCACTCTTTGACCGGGTCAGGTAACCCGGTGAATTCCGTCC 3597226 Query 2111 ATCTGGGTGTGTAAGGTTGCACAACTGGCCTGAAATGATTGTTGGCGAAGG-ATAGAATG 2169 |||||||||| ||||||||||| || || | |||||| |||||||||| || || | Sbjct 3597225 ATCTGGGTGTATAAGGTTGCACGACCGGGCGGAAATGGAAATTGGCGAAGGCATTGA-TC 3597167 Query 2170 GAAGGCCATCTGAGAACGAAATCTGTTGGGCAGGACTCTCGTATGTTACTGAAGAACTCC 2229 || ||||||| |||| | | || || || ||||| |||| | |||| |||||||||| Sbjct 3597166 GATGGCCATCGAAGAATGTAGTCGGTAGGACAGGATTCTCTGACGTTATCGAAGAACTCC 3597107 Query 2230 TCCTTGGTGTTGGATGAATCAAGAATTCGTCTCCATTCCACGTTGCTGTTGCCAATACTG 2289 |||||||||||||| || || || || |||| |||| | ||||| |||| ||| | | Sbjct 3597106 TCCTTGGTGTTGGAGGATTCGAGTATGCGTCCCCATGTCTCGTTGTTGTTTCCAGAATGG 3597047 Query 2290 TTTGGAGAGCGCCCTCCCAGTCGAAGCTCTCCAAATGTTCT-AGGGCT-CGTGTCCTCCT 2347 || ||||||||||||||||||||||||||||| ||| || ||||| | |||||||| Sbjct 3597046 TTCGGAGAGCGCCCTCCCAGTCGAAGCTCTCC--ATGGACTCGGGGCTGCTGGTCCTCCT 3596989 Query 2348 TGGTGATATACTCGAATGCTCGCTTTGGGGCGTTGAGTCCGTCGATTCTTGGGTGAATCG 2407 | || ||||| || ||||||||||||||||| |||||||||||| | |||||||| | Sbjct 3596988 TAGTAATATATTCCCATGCTCGCTTTGGGGCGACGAGTCCGTCGATGTTAGGGTGAATGG 3596929 Query 2408 TTCGACCGTCTGGGAGTATGATGTTGAAAAACAGGTTCCCATTGACGTCGA---GTTTCT 2464 ||| ||||| ||||| ||||| | ||||||||||||||||||||| | || ||||| Sbjct 3596928 ATCGTCCGTCGGGGAGAATGATATCGAAAAACAGGTTCCCATTGACRTTGATGCGTTTC- 3596870 Query 2465 TGTCACACTGGATAATACAGTGTGTGTGGAATCCTCCTTCAGGTTGTTCTTCAGTAGGCT 2524 ||||||||||| || ||||| ||||| ||||| |||||||| | ||||| || || | Sbjct 3596869 --TCACACTGGATGATGCAGTGGGTGTGAAATCCGCCTTCAGGATTGTCTTCGGTGGGTT 3596812 Query 2525 GATGATGTTCTAGTGATACTGCAAGGGATAGAATCACATAT 2565 |||||||||||| | || || || ||||||| |||||| Sbjct 3596811 GATGATGTTCTAAAGCGACGGCGAGAAATAGAATGACATAT 3596771 Score = 462 bits (512), Expect = 4e-127 Identities = 667/923 (72%), Gaps = 37/923 (4%) Strand=Plus/Minus Query 363 CGAGCCGT-TGACTCTAGAGGAAGGCGAGGACTTTCTTCAATTCCAGAAGGAAGTGAAGA 421 ||||||| ||||| | || || || ||| ||| | ||||||||||||| ||||||| Sbjct 3598942 CGAGCCGGCTGACTTTGGAAGACGGGGAGCGCTTCATCCAATTCCAGAAGGGTGTGAAGA 3598883 Query 422 AATTGCTGAAGCTTAAG-GTTAGTTTTAAGCGTAAGTGTTGT-TTGTACGAGGACATATA 479 || | ||| | ||| || ||| | || ||| |||| ||||||| ||| | || Sbjct 3598882 AAATACTGCGGGCGAAGTGTAAGTATCGTACG-AAG-GTTGAGTTGTACGCGGAGCTGTA 3598825 Query 480 CAAGAAGTATGGCGGTTCAGAGTCAA--AAGAGAAAGTATACTCCTCCGGCCAGTTGGAC 537 || ||||||||| |||| | || ||||||| | | | ||| || |||| Sbjct 3598824 CAGTAAGTATGGCCC-----AGTCCAGGAAAAGAAAGTGGAATGCACCGAAGAGCGGGAC 3598770 Query 538 GAGGAAGAGGAAGACGACCGGTGGGAGGACAGTTTGGAA--GAAATACCAATGGAAGAGA 595 || | || |||||||| ||||| | | ||| | ||||| | | || || Sbjct 3598769 GAAGCGGAAAAAGACGAC---TGGGAAAAGCTATAGGAGCCGGAATAC--AGGTAAAAGG 3598715 Query 596 CCGGTGCGAAGTAACCGGGCTGTGAAGTTGAAGATGTATGACGACATGTTAGGTGCATCT 655 |||| | | |||| ||| | ||||| ||| || || || | || |||| ||| Sbjct 3598714 GCGGTCAAACCTGACCGTGCTTTAAAGTTAAAGTATTACGATGATTTCTTCGGTGGTTCT 3598655 Query 656 GGAGTTGGATCTACCATCAGTAATGATGGGATGATCACTATGTTGAACAACTATGTTCAA 715 |||||||||||||| |||||||||||||| |||||||| ||| |||| || |||||||| Sbjct 3598654 GGAGTTGGATCTACTATCAGTAATGATGGTATGATCACGATGGTGAATAATTATGTTCAC 3598595 Query 716 GGAATTGGTGATAGCCAGAGGTCAAACAACTTGACCGTTACGAGGCATTTGAAGTTTGAT 775 || | || || || || |||||| ||| |||||||||| | ||||||||| | ||| Sbjct 3598594 GGTCTCGGGGACAGTCAACGGTCAAGTAACGTGACCGTTACACGACATTTGAAGATGGAT 3598535 Query 776 ATGTCTCTTATGGCTAGTGGTGCATTTTGGGCGAGTCCTAACTATATGACTCAATATCAT 835 ||| | | |||| ||| ||| ||| ||||||||| |||||||| ||||||||| Sbjct 3598534 ATGGCATTGATGGGAAGTTCAAAATTCTGGATGAGTCCTAATTATATGACGCAATATCAT 3598475 Query 836 TGGGTTATTGTGGATCGTGATGTTGGTTCTACGTTTCCGACTCAGT-TGAGTACTATCTT 894 ||| ||||||| || || || || ||| |||| ||||| || || |||| || || Sbjct 3598474 TGGCTTATTGTCGACCGGGACGTGGGTGCTACATTTCCT-CTTAGCCTGAGCGAGATATT 3598416 Query 895 TGATATTCCGACTGGTGGTCAGGCTATGCCTTCCACCTATCGGATTAGGAGGGATGCGAA 954 |||||||||| ||||||| ||| || || ||||| ||||| || | |||||| || Sbjct 3598415 TGATATTCCGTCTGGTGGACAGACTGCTCCGTCCACTTATCGTATCCGCAGGGATTGTAA 3598356 Query 955 TGAACGATTTATCGTGAAGAAGAAG-TGGCAGACTCATCTGATGTCTACTGGTACTGATT 1013 ||| || || ||||| |||| || | ||| ||||||| ||||||| || ||| || Sbjct 3598355 TGAGCGTTTCATCGTCAAGA-GACGATGGACGACTCATTTGATGTCAACAGGTTGCCCTT 3598297 Query 1014 ATGGAGGAAAGC--AGACCTATAAGGCGCCTTCAATGCCTAATTATAAGAAGGCTATGAA 1071 |||| ||| | |||| |||||||| || || ||||| ||||| |||||||||||||| Sbjct 3598296 ATGG--GAATTCGGAGACGTATAAGGCACCGTCGATGCCGAATTACAAGAAGGCTATGAA 3598239 Query 1072 CATTAATATTCGGAATATCAATGTCAAGACATTGTGGAAGGACACTGGAGGTGGCAAATA 1131 | || ||||||||||||||||||||||| ||||||||||| || || ||||| || || Sbjct 3598238 TCTCAACATTCGGAATATCAATGTCAAGACCTTGTGGAAGGATACGGGTGGTGGAAAGTA 3598179 Query 1132 TGAAGATGTGAAGGAGAATGCTATTCTTTACGTAGTGGTTAATGATAATACTGATAATAC 1191 || || || ||||||||||| || || || ||||| || |||||||| | || | ||| Sbjct 3598178 CGAGGACGTTAAGGAGAATGCGATACTGTATGTAGTTGTCAATGATAACAGCGACAGTAC 3598119 Query 1192 AAATATGTATGCTACTTTGTTTGGTAATTGTAGGGCTTATTTCTATT----GATTATTAG 1247 || ||||| |||| || ||||| |||||||| ||||||||||| || |||| Sbjct 3598118 GAACATGTACGCTATGTTATTTGGAAATTGTAGATGTTATTTCTATTAGAAAATGTTTAG 3598059 Query 1248 AAATGCCCAATGATGTTGAAGTT 1270 ||||||||||||| ||| Sbjct 3598058 ------CCAATGATGTTGATGTT 3598042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8991903715350