Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_015051.1 Length=2860 Score E Sequences producing significant alignments: (Bits) Value seq941 589 4e-165 >seq941 Length=10723577 Score = 589 bits (652), Expect = 4e-165 Identities = 766/1059 (72%), Gaps = 10/1059 (1%) Strand=Plus/Minus Query 1499 GAATACCAAACTTCATCACTAGATAAATAGTACACTTCGCAGTTTGCGTGGAACCAATCC 1558 |||||||||| ||| | ||| ||| || || || || || || | ||||||||| Sbjct 3597846 GAATACCAAATTTCGCCTGGGTATAGATAATAGACCTCACAATTGGCATAGAACCAATCG 3597787 Query 1559 TTCATTGCATCACTCATACATGGAATCCAGTCCATATCTGGATTTGTTATAGCAATACAT 1618 ||| || ||||||||| | || ||||| |||||||||||||| || ||||| || || Sbjct 3597786 CGCATAGCTTCACTCATAGAAGGTATCCAATCCATATCTGGATTGGTAATAGCTATGCAG 3597727 Query 1619 GGTCTCCCTCCTGGGATTATGAGGTTTGGTTTGTGTTTTATCCAAACACTATAGTCTTCA 1678 |||| || || || || | | || || | || || |||||||| ||||||||||| Sbjct 3597726 GGTCGGCCGCCCGGAATAGTTAAATTAGGCCTATGCTTAATCCAAACGCTATAGTCTTCG 3597667 Query 1679 TTACATCCTATTATGGATTTGAACAACTCTTGTTGTATTTTCATATANNNNNNNNNNNNN 1738 ||||| ||||| || ||||| || | || || || |||||| || Sbjct 3597666 TTACAACCTATAATAGATTTAAAGAGTTCCTGCTGAATTTTCTGGTATCGAATGTCATCT 3597607 Query 1739 NNNNNNNNNNNNNNNNNNNNNNCAATGTCATAATTGGACCAATCTAGTACCATTCCTGAC 1798 | |||||||| |||||||||| ||||||||||| ||| Sbjct 3597606 ATGACGTGATAGGCCGTATTGTCTATGTCATAGGTGGACCAATCGAGTACCATTCCAGAC 3597547 Query 1799 ATGTAGTGATGTCTTCCTAACGATCTTGCCCATTGGGTCTTTCCTGTCCTTGAAGGACCG 1858 ||||| ||||| | |||||| |||| |||||||| ||||| || || ||||| || ||| Sbjct 3597546 ATGTAATGATGCCGTCCTAATGATCGGGCCCATTGAGTCTTGCCGGTTCTTGATGGGCCG 3597487 Query 1859 CAGATGTAGAGACTTCGGGGTCTGACTGGTCTGTTGTCTGGTTCCTGGAAGAATTTAGAT 1918 ||||||||||| ||||| |||| ||| || |||||||| |||||||| | | | | |||| Sbjct 3597486 CAGATGTAGAGGCTTCGTGGTCGGACGGGCCTGTTGTCGGGTTCCTGAAGGCAAT-AGAT 3597428 Query 1919 -CGTTAGGATTTTCACTACATGTTAATTCGTCGCCTAGAC-GT-TCTATGTGGTAATGTT 1975 | |||||| || | || || ||| | ||| | || |||| | ||||||| Sbjct 3597427 TCATTAGGAACGTCCATGCAACGTATGGCGTTG--TAGGCTGTATCTAATTCATAATGTT 3597370 Query 1976 CTGCAATACTTATTTCCCAATCCTGTAGGATTGAACCTCTACAGTTATTACATAGCTCGT 2035 || ||| | || ||| ||||| | | | || || | || ||||| || | Sbjct 3597369 CTTGAATGCCTAATTCTTGTTCCTGGAAAACAGCGTTTCGGCAATCATGACATAATTCAT 3597310 Query 2036 A-ATTAAGACAGTGACT-ACTTACGAAATATATATTGTGTTCCGCCCACTCTTTGATTTG 2093 | || ||| || || | |||||||||| ||||||||||||||||||||||||||| | Sbjct 3597309 ACATGAAG-CA-TGTTTGACTTACGAAAAATATATTGTGTTCCGCCCACTCTTTGACCGG 3597252 Query 2094 GTCAGGCAACCTAGTGAACTCCGTCCATCGGGGTAGATAAGGTTGCACAACTGGCCTGAA 2153 |||||| |||| ||||| |||||||||| |||| |||||||||||| || || | ||| Sbjct 3597251 GTCAGGTAACCCGGTGAATTCCGTCCATCTGGGTGTATAAGGTTGCACGACCGGGCGGAA 3597192 Query 2154 ATGGTAGTTGGCGAAGGCCAAAATTGAAGGCCATCTGAGGACAAAGTCCGTTGGGCAGGA 2213 |||| | ||||||||||| || || ||||||| || | |||| || || ||||| Sbjct 3597191 ATGGAAATTGGCGAAGGCATTGATCGATGGCCATCGAAGAATGTAGTCGGTAGGACAGGA 3597132 Query 2214 TTCTCTGATGTTATTGAAGAACTCGTCCTTGGTGTTGGATGAATCAAGAATTCGTCTCCA 2273 |||||||| ||||| ||||||||| |||||||||||||| || || || || |||| ||| Sbjct 3597131 TTCTCTGACGTTATCGAAGAACTCCTCCTTGGTGTTGGAGGATTCGAGTATGCGTCCCCA 3597072 Query 2274 TTCCAGGTTGCTGTCGCCAAGACGGTTTGGAGAGCGCCCTGCCAGTCGAAGCTCTCCAAA 2333 | | |||| ||| ||| | |||| |||||||||||| ||||||||||||||||| Sbjct 3597071 TGTCTCGTTGTTGTTTCCAGAATGGTTCGGAGAGCGCCCTCCCAGTCGAAGCTCTCCATG 3597012 Query 2334 GCATCGTGGTTGTTGGTCCTCCTTGGTGATGTACTCCCAAGCTCGCTTGGGGGCGTTGAG 2393 | ||| || || ||||||||||| || || || ||||| |||||||| |||||| ||| Sbjct 3597011 GACTCGGGGCTGCTGGTCCTCCTTAGTAATATATTCCCATGCTCGCTTTGGGGCGACGAG 3596952 Query 2394 TCCGTCGATTCTTGGATGTATTGTTCTGCCATCTGGTAGGATGATGTTGAAAAACAGGTT 2453 ||||||||| | || || || | || || || || || ||||| | |||||||||||| Sbjct 3596951 TCCGTCGATGTTAGGGTGAATGGATCGTCCGTCGGGGAGAATGATATCGAAAAACAGGTT 3596892 Query 2454 CCCATTAACCTGTAATTTTTTATTGCACTGGAATATGCAATGTGTGTGGAATCCCCCTTC 2513 |||||| || | | ||| | ||||||| ||||| || ||||| ||||| ||||| Sbjct 3596891 CCCATTGACRTTGATGCGTTTCTCACACTGGATGATGCAGTGGGTGTGAAATCCGCCTTC 3596832 Query 2514 AGGGTTTGATTCAGTTGGTTGGTGGTGTTCCAATGCAAC 2552 ||| || ||| || ||||| || ||||| || || || Sbjct 3596831 AGGATTGTCTTCGGTGGGTTGATGATGTTCTAAAGCGAC 3596793 Score = 277 bits (306), Expect = 3e-71 Identities = 417/597 (70%), Gaps = 9/597 (2%) Strand=Plus/Minus Query 651 TGGTGCTGGAGGTATTGGTTCAACCATCAGCAATGATGGGTTGATTACTATGCTCAATAA 710 |||| |||||| |||| || || ||||| |||||||| |||| || ||| | ||||| Sbjct 3598661 TGGTTCTGGAG---TTGGATCTACTATCAGTAATGATGGTATGATCACGATGGTGAATAA 3598605 Query 711 TTATGTTCAGGGTATAGGTGACAGTCAGAGGTCTACGAATGTGACTGTTACAAGGCACAT 770 ||||||||| ||| | || |||||||| |||| | || ||||| |||||| | || | Sbjct 3598604 TTATGTTCACGGTCTCGGGGACAGTCAACGGTCAAGTAACGTGACCGTTACACGACATTT 3598545 Query 771 GAAGTTCGATATGGCTCTCATGGCCAGTTCTGGGTTTTGGGAGGCTCCCAATTATATGAC 830 |||| | |||||||| | |||| ||||| || ||| | ||| ||||||||||| Sbjct 3598544 GAAGATGGATATGGCATTGATGGGAAGTTCAAAATTCTGGATGAGTCCTAATTATATGAC 3598485 Query 831 TCAATATCATTGGATTATTGTTGATCGAGATGTTGGATCTGTCTTTCCGACTAAGTTGGA 890 |||||||||||| ||||||| || || || || || || ||||| || || Sbjct 3598484 GCAATATCATTGGCTTATTGTCGACCGGGACGTGGGTGCTACATTTCCTCTTAGCCTGAG 3598425 Query 891 TATGATTTTTGATATTCCTTCTAATGGTCAGGCTATGCCGTCGACCTATAGAATTCGTCG 950 ||| ||||||||||| ||| ||| ||| || ||||| || ||| | || || | Sbjct 3598424 CGAGATATTTGATATTCCGTCTGGTGGACAGACTGCTCCGTCCACTTATCGTATCCGCAG 3598365 Query 951 TGATAGTAATGAACGATTTATCGTGAAGAAGAAG-TGGACTACGCATATGATGTCTACGG 1009 ||| ||||||| || || ||||| ||| ||| | ||||| || ||| ||||||| || | Sbjct 3598364 GGATTGTAATGAGCGTTTCATCGTCAAG-AGACGATGGACGACTCATTTGATGTCAACAG 3598306 Query 1010 GTACTGATTATGGTGGCAAAC--AGACTTACAAAGCGCCGTCTCAGCCTAATTATAAGAA 1067 || ||||| || | | |||| || || || ||||| ||| ||||| ||||| Sbjct 3598305 GTTGCCCTTATG--GGAATTCGGAGACGTATAAGGCACCGTCGATGCCGAATTACAAGAA 3598248 Query 1068 GGCTATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNACGATATGGAAGGACACCGGAGG 1127 ||||||||| || | |||||||| || || || Sbjct 3598247 GGCTATGAATCTCAACATTCGGAATATCAATGTCAAGACCTTGTGGAAGGATACGGGTGG 3598188 Query 1128 TGGAAAATATGAAGATGTTAAAGAGAATGCTCTGTTGTACGTTGTTGTCAACGATAATAC 1187 |||||| || || || ||||| |||||||| | |||| || |||||||| ||||| | Sbjct 3598187 TGGAAAGTACGAGGACGTTAAGGAGAATGCGATACTGTATGTAGTTGTCAATGATAACAG 3598128 Query 1188 TGATAACACTAATATGTATGCCACATTATTTGGTAATTGTAGGTGTTATTTCTATTA 1244 || | || || ||||| || | |||||||| |||||||| |||||||||||||| Sbjct 3598127 CGACAGTACGAACATGTACGCTATGTTATTTGGAAATTGTAGATGTTATTTCTATTA 3598071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9039903201375