Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_001439.1 Length=2647 Score E Sequences producing significant alignments: (Bits) Value seq19028 120 5e-24 >seq19028 Length=31091 Score = 120 bits (132), Expect = 5e-24 Identities = 246/359 (69%), Gaps = 20/359 (6%) Strand=Plus/Plus Query 1686 TTTTCCTCTTTGTTGAGGAAGTCTTTATAACTGGAACCCTCACCTGGATTGCACAGCACG 1745 |||||||| | | ||||| |||||||| |||||| ||| |||||||||| | | Sbjct 13831 TTTTCCTCCTCG---AGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1746 ATTGATGGTATTCCTCCTTTAATTTGAACCGGCTTTCCATATTT-ACAGT--TGGATTGC 1802 |||| ||||| || || || || | || ||| |||| ||||| || | |||| | Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGA---C 13944 Query 1803 CAGTCCTTTTGTGCCCCAATTAGCTCTTTCCAGTGCTTTAACTTCAAATAATTGGGGCTT 1862 || | |||| ||||| || | |||||| ||||||||| ||||| || Sbjct 13945 CAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAG------ATAATGCGGATCG 13998 Query 1863 ATGTCATCAATGACGTTGTATTCCACTGAGT--TGGAATAGACACGTGAATTAAAGTCCA 1920 | || |||||||| ||| || ||| | | | ||||| | ||| || || | Sbjct 13999 ACGTTATCAATGATGTTATA--CCAGGCATTATTTGAATAAATTTTATTATTCAAATCTA 14056 Query 1921 AATGACCGCTCAAATAATTATGTGGGCCTAATGCACGAGCCCACATTGTCTTTCCAGTTC 1980 ||||||||| | ||||||||||| ||||| | | |||||| |||||| || |||| Sbjct 14057 AATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTC 14116 Query 1981 GTGAATCACCTTCGACGATGATACTAATAGGTC-TTTCTGGCCGCGCAGCGGAACCCCT 2038 || ||||| || | || ||||| | |||| || |||||||||||||| | |||| Sbjct 14117 TAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCT 14175 Score = 93.3 bits (102), Expect = 7e-16 Identities = 250/374 (67%), Gaps = 34/374 (9%) Strand=Plus/Plus Query 1014 GAATCATACGGAGAATGCGTTATTGTTGTATATGGCATGTACACATGCCTCTAATCCTGT 1073 || |||||| || ||||| |||||||||||| | || ||||| ||||||||||| Sbjct 13080 GACTCATACTGAAAATGC---ATTGTTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1074 ATATGCGACATTGAAAATTCGGATCTATTTCTATGATTCGATAACCAATTAATAAAATTT 1133 |||| || ||| || || | ||||| ||||| || | |||||||||| || Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1134 ATATTTTATATCATGATTCTCAAGTACA------GT------ATTTACATATGATTTGTT 1181 ||||||| ||||||| ||||||||| || | |||||| ||| | | Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACAT-TGAATAATA 13255 Query 1182 TGTTGCGAACTGAACAGCTCGAATGACATTGTTTATTCCTATTACGCCTAACC--TATGT 1239 ||| | ||||||| ||| | |||||| || | || || ||||| | | | Sbjct 13256 CATTG-----TCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAA 13310 Query 1240 AAATACAATAAAACTAAGAGTCTAAAT-CTATTTA-AATATGT-CGTCCCAGAAGCTTGA 1296 |||| || | || | | | ||||| || || | || | || ||| || | | | Sbjct 13311 AAATTTCATTACACGA--AATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGT--A 13366 Query 1297 ATCGATGTCGTCCAGACTTGGAAGTTCAGGAATGCTTTGTGGAGATCCAGTGCTTTCCTG 1356 | ||| |||| || | |||||| ||||| |||||||| |||| |||| | ||||| Sbjct 13367 AACGA----GTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTC 13422 Query 1357 AGGTTGTGATTGAA 1370 |||||||| ||||| Sbjct 13423 AGGTTGTGGTTGAA 13436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8358590654934