Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_001507.1 Length=2588 Score E Sequences producing significant alignments: (Bits) Value seq19028 214 3e-52 >seq19028 Length=31091 Score = 214 bits (236), Expect = 3e-52 Identities = 510/760 (67%), Gaps = 27/760 (4%) Strand=Plus/Plus Query 1591 GAATTTCGCATTATGGAAAGTCCAGTTCTTTAGTGGAGTGTTTTCCTCTTTGTCGAGGAA 1650 ||||| |||||||| |||| ||| || |||| | | | |||| || | |||||||| Sbjct 13788 GAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAA 13847 Query 1651 AACTTTATAGCTAGCACCCTCTCCAGGATTGCACAGCACGATTGACGGGATACCTCCTTT 1710 |||||||||| | | ||||||||||||| | ||||| ||| || || || || Sbjct 13848 CTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTT 13907 Query 1711 AATTTGAACTGGCTTTCCGTATTTACAGTTAGTCTGCCAATCTCTTTGGGCCCCAATGAG 1770 || | || ||| |||||||||| || | ||||| ||||||||||| || | Sbjct 13908 TATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAA 13967 Query 1771 TTCTTTCCAATGTTTCAACTTTAGATATTGCGGTGTGACATCATCGATGACGTTATACTC 1830 ||||| || || ||||||||| ||||| ||| | ||| |||| ||||||| Sbjct 13968 CTCTTT--AAAGT----GCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCA 14021 Query 1831 AACCTTGTTTGAGTAAACCCTAGAATTGAGATCCAAATGCCCGCTCAAATAATTATGTGG 1890 | || ||||| |||| || ||| | ||| ||||| |||| | ||||||||||| Sbjct 14022 GGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGG 14081 Query 1891 GCCTAGTGAACGAGCCCACATAGTCTTTCCCGTCCGACTATCGCCCTCGATGATAATACT 1950 |||| || | |||||| ||||| || || | | || ||||| |||| |||||| Sbjct 14082 TCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACT 14141 Query 1951 AATAGGTC-TCTCCGGCCGCGCAGCGGAACTCTTTCCAAAATAATTTTCAGCCCATTGTC 2009 | |||| | ||||||||||||| | | || || ||||||||| || | Sbjct 14142 CTTGGGTCGTTAATGGCCGCGCAGCGG----CATCCCTAA--CATTTTCAGC----TG-C 14190 Query 2010 TCATCTCGTCTGGCACGTTAGTAAATGATGAGACGTGGAACGGAGGAAGCCATGGTTCAG 2069 || | | || || | || || || || ||| || | ||||||| Sbjct 14191 CCAGCAC-TC-----AATTGTTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTCAG 14244 Query 2070 GAGTCTTATCAAATATCCTATCTAAATTGCTATTTAGATTGTGGAACTGAAATAAATATT 2129 ||| ||||| | |||||| || | || ||| || | ||||||| | | | Sbjct 14245 GAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAAACT 14304 Query 2130 TTTCTGGGATTTTCTCTCTAATTATCTGCAGGGCTTCTTCTTTGGAAGAAGCATTTAACG 2189 || |||| ||||| |||||||| || || |||||||| | || | |||| |||||| Sbjct 14305 TTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTAACG 14364 Query 2190 CCTCTGCTGCAGCGTCGTTAGATGTTTGGCAACCTCCTCTAGCACTTCGACCGTCGACCT 2249 | ||||| | | || || | ||| || |||||||||||||| ||| || |||| | Sbjct 14365 CTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTT 14424 Query 2250 GGAATTCTCCCCATACAAGAGT-ATCTCCGTCTTTGTCGATGTACGTCTTGACGTCGGAA 2308 | || | ||||| | | || ||| | |||||| ||||||| |||| || || ||| Sbjct 14425 GAAAATTGCCCCAGTC-GGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGAA 14483 Query 2309 GACGATTTAGCTCTCTGAATGTTTGGATGGAAATGTGCTG 2348 || |||||||| || | |||||| ||| ||||| || Sbjct 14484 GATGATTTAGCGGATTGGAAGTTTGGGTGG-TATGTGGTG 14522 Score = 102 bits (112), Expect = 1e-18 Identities = 253/377 (67%), Gaps = 18/377 (5%) Strand=Plus/Plus Query 959 GAATCATACTGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGT 1018 || ||||||||| || || |||| |||||| | |||||||| ||||| ||||| Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1019 GTATGCGACGTTGAAAATTCGAATCTATTTTTATGATTCGATAACAAATTAATAAAATTT 1078 ||| || ||| || || | ||||||||||| || |||||||||||| || Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1079 ATATTTTATTGAATGATTTTCGAGTACATGC---GTT--ATATATGA-TCTGTCTGTTGC 1132 |||||||| ||||| ||| ||||||| | ||| | || | || | | | Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1133 GAAACGAACAGCTCTAATAACATTGTTAATACATATAACGCCTAACTGTTCAAGGTACAA 1192 ||||||||||||| ||||||||||| ||||| ||||| | || | | Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1193 CAT--CACTAAGTATTTAAAT-CTATTTAAATAAGTTCTCCCAGAAGCTGTCGTCGATGT 1249 ||| ||| || |||||||| || || | | || | | | || | || ||| Sbjct 13317 CATTACACGAA--ATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGA--- 13371 Query 1250 CGTCCATACTTGGAAGTTGAGAAATGCCTTGTGGAGATCCAATGCTCTCCTCAGGTTGTG 1309 |||| | | ||||||||| || || ||||| |||| || | | ||||||||||||| Sbjct 13372 -GTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTG 13430 Query 1310 GTTGAACCTGATTTGTA 1326 |||||| | ||||||| Sbjct 13431 GTTGAATCGAATTTGTA 13447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8169858604172