Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_001932.1 Length=2815 Score E Sequences producing significant alignments: (Bits) Value seq19028 176 8e-41 >seq19028 Length=31091 Score = 176 bits (194), Expect = 8e-41 Identities = 265/372 (71%), Gaps = 5/372 (1%) Strand=Plus/Plus Query 1828 GCATTTTTCAGAGCCCAGGCTTTTAATGCGCTATTCTTTTCCTCGTCCAGGAATTCTTTA 1887 ||||| | || || ||| ||||||| |||| |||||||| || ||||| |||||| Sbjct 13795 GCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTA 13854 Query 1888 TAGCTGGAATTGGGGCCTGGATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTTGA 1947 ||||||||| | || || |||||||| | |||||| || || || || || || || | Sbjct 13855 TAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTT 13914 Query 1948 ACTGGCTTACCGTACTTGGTGTTTGATTG--CCAGTCCTCTGGGCCCCCATGAATTCTTT 2005 || ||| | ||||| || ||| | | | | | || ||||||||||| || || || Sbjct 13915 ACAGGCCTTCCGTA-TTTTACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAACTC-TT 13972 Query 2006 TGAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCATGCATCATTGT 2065 | ||||||||||| || || |||||||||| |||||||| ||| ||||| |||| ||| Sbjct 13973 TAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTG 14032 Query 2066 TGTAGACCTTAGGACTTAAATCCAGGTGTCCACATAGGTAATTATGTGGACCCAATGCAC 2125 || | ||| | | ||||| | || || ||||||||||||||||| || || | | Sbjct 14033 AATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATC 14092 Query 2126 GGGACCACATGGTCTTGCCCGTCCGACTATCGCCTTCGATTACGATTGATTTTGGTC-TC 2184 | |||| ||||| || || | | || || || || || || || |||| | Sbjct 14093 TTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTT 14152 Query 2185 AAAGGCCGCGCA 2196 || ||||||||| Sbjct 14153 AATGGCCGCGCA 14164 Score = 141 bits (156), Expect = 2e-30 Identities = 362/542 (67%), Gaps = 47/542 (9%) Strand=Plus/Plus Query 1175 CATACTGAGAATGCATTAATGTTGTACATGGCGTGTACTCATGCCTCTAATCCTGTATAC 1234 |||||||| |||||||| |||||| || | |||||||| |||||||||||||| Sbjct 13084 CATACTGAAAATGCATT---GTTGTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1235 GCTACGTTGAAGATTAGAATTTATTTCTATGATTCAGTG-AGCAA-TTAATAAATATTTA 1292 ||| ||| | | | |||||| ||||| |||| | ||| |||||||||||| | Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAG--AGTGTATCAAATTAATAAATATTGA 13198 Query 1293 ATTTTATTAAATTAGACT---GCTCAAC-ACGGTCAGTCCCATGGATTACATTGTACAAT 1348 |||||||| || | | | | || | || || | | || ||||||||| | ||| Sbjct 13199 ATTTTATTTCATGATATTCAAGTACATCCACTGTTTG-CTCA---ATTACATTGAATAAT 13254 Query 1349 ACATGCTCTACGGCTTTTACAATAGTATTAATACTTATAACTCCTAAGCTATCTAAGTAT 1408 |||| ||||| ||| | | |||| | |||||||| ||||| ||||| | ||||| || Sbjct 13255 ACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAAT 13314 Query 1409 TTCAATACTTGGGTCTTAAATACCCTCAAGAAACGCCAGGTCTGAGGCTGTAAGGTCGTC 1468 |||| ||| | |||||||| || |||||| | ||| |||| |||| ||| Sbjct 13315 TTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTC 13374 Query 1469 CAGACCTTGAAATCCATCCA-GCATTGATGTAGTCCCAACGCTTTCCTCAGGTTGTGGTT 1527 | || |||||| | | | || ||| || || || | ||||||||||||||||| Sbjct 13375 CTGATCTTGAAGTTGAGGAAAGCTTTG-TGAAGATTCAGTTCCTTCCTCAGGTTGTGGTT 13433 Query 1528 GAACCGTATCTGGACGGTTATTATGTCCTGGTTCATTACGAA-----CGGTCTGTTGTCG 1582 ||| || || || | |||||||| ||| | |||| |||||| | | Sbjct 13434 GAATCGAATTTGTATTTCGATTATGTC--GGT---TGTCGAATTTGTTGGTCTGAGATTG 13488 Query 1583 TGTTGAATGATCTTGAAATAGAG-GGGATTTGGTACCTCCCAGATA-------------- 1627 || | | |||||||||||| || | | || ||||| ||| Sbjct 13489 TGGTTGAGGATCTTGAAATATAGAAACAGCTAATATTTCCCAAATATGTGGTTGACGTAA 13548 Query 1628 -----AAGACGCCATTCATCGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCA 1682 |||||||||||||||| || ||||||||| ||||||||||||| ||||| Sbjct 13549 ACGACTAGACGCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATCCA 13608 Query 1683 TG 1684 || Sbjct 13609 TG 13610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8892704157100