Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_001936.1 Length=2634 Score E Sequences producing significant alignments: (Bits) Value seq19028 172 9e-40 >seq19028 Length=31091 Score = 172 bits (190), Expect = 9e-40 Identities = 225/310 (73%), Gaps = 10/310 (3%) Strand=Plus/Plus Query 1719 TCGAGGAAATCTTTATAACTGGACCCCTCTCCAGGATTGCACAGCACGATTGATGGGATT 1778 |||||||| |||||||| ||||| ||||||||||||| | ||||| || || Sbjct 13840 TCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATC 13899 Query 1779 CCACCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTG--CCAGTCCCTTTGGG 1836 ||||| || || | || ||| |||| ||||| ||| ||| ||| | ||||||| Sbjct 13900 CCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTG--CTGGACCAATTGCTTTGGG 13957 Query 1837 CCCCAATCAATTCCTTCCAGTGCTTTAGCTTTAGGTAATGCGGAGCGACGTCATCAATGA 1896 |||| || || || || |||||||||| | |||||||| |||||| |||||||| Sbjct 13958 CCCCCATAAACTCTTTAAAGTGCTTTAGAT------AATGCGGATCGACGTTATCAATGA 14011 Query 1897 CGTTATACTTGACGTCATTTGAGAAAACCCTAGAATTGAAATCAAGATGGCCGCTCAAGT 1956 ||||||| | | | |||||| ||| || ||| ||||| | ||| |||| | || Sbjct 14012 TGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGT 14071 Query 1957 AATTATGTGGGCCTAACGACCTAGCCCACATTGTCTTGCCCGTTCTTGAACCACCTTCTA 2016 |||||||||| ||||| || || |||||| |||||| || ||||| || |||| || | Sbjct 14072 AATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAA 14131 Query 2017 TGATTATACT 2026 ||| ||||| Sbjct 14132 TGACAATACT 14141 Score = 132 bits (146), Expect = 8e-28 Identities = 265/386 (69%), Gaps = 34/386 (9%) Strand=Plus/Plus Query 1029 GAATCATACGGAGAACGCTCTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGT 1088 || |||||| || || || |||| |||||| | |||||||| ||||| ||||| Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1089 ATATGCGACATTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAATAAATTTT 1148 |||| || ||| || || | ||||||||||| || ||||||||||||| || Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1149 GAATTTTATTTCATGATTCTCGAGTACA------------TAATTTACATATGAACGGTC 1196 ||||||||||||||||| || |||||| | | |||||| |||| | Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACAT-TGAATAATA 13255 Query 1197 TGTTGCCCAAGATACAGCTCGTATAACGTTATTGAGACCAATAACTCCTAACCTATCTAA 1256 ||| | |||||||| |||| || || | || |||||| ||||| | ||||| Sbjct 13256 CATTGTC-----TACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAA 13310 Query 1257 GTACAACAT--AACTAAATGCCTAAAT-CTATTCA-AATATGT-CGTCCCAGAAGCTCGA 1311 | ||| || |||| ||||| || || | || | || ||| || | | | Sbjct 13311 AAATTTCATTACACGAAAT--TTAAATACTCTTAAGAAAACGTATGTCGGAGGACGT--A 13366 Query 1312 ATCGATTCCGTCCAGACTTGGAAGTTCAGGAACGCTTTGTGAAGATTTAGTGCTCTCCTC 1371 | ||| |||| || | |||||| ||||| |||||||||||||| ||| | ||||| Sbjct 13367 AACGA----GTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTC 13422 Query 1372 AGGTTGTGGTTGAACCGGATTTGTAT 1397 |||||||||||||| || |||||||| Sbjct 13423 AGGTTGTGGTTGAATCGAATTTGTAT 13448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8317005626800