Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_001938.1 Length=2601 Score E Sequences producing significant alignments: (Bits) Value seq19028 159 6e-36 >seq19028 Length=31091 Score = 159 bits (176), Expect = 6e-36 Identities = 534/819 (65%), Gaps = 34/819 (4%) Strand=Plus/Plus Query 1639 TATTTTCTGCTTTGTCTAAGAACTCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCA 1698 |||||| | | | || | ||||||||||||||||| | |||||||||||| | | Sbjct 13826 TATTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGA 13885 Query 1699 CGATTGCTGGGATTCCGCCTTTAATTTGAACTGGCTTACCGTACTTGCAATTTGATTG-C 1757 ||||| || || || || || || | || ||| | ||||| || | ||| | | | Sbjct 13886 AGATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTT-ACCTTGCTGGAC 13944 Query 1758 CAATCTTTCTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTTAGATAATGCGGTGCG 1817 |||| | |||||||||| || ||||| ||||||| |||||||||||| || Sbjct 13945 CAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTT------TAGATAATGCGGATCG 13998 Query 1818 ATGTCATCAATGACGTTATACTGCACATCATTCGAGAAGACTCGACCATTGAAGTCTAGG 1877 | || |||||||| ||||||| ||| ||| || | | | | ||| || |||| Sbjct 13999 ACGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAA 14058 Query 1878 TGTCCACTGAGATAGTTATGTGGGCCTAACGCACGCGCCCACATCGTCTTCCCTGTTCTT 1937 || || | || || |||||||| ||||| | | |||||| |||||||||||||| Sbjct 14059 TGACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTA 14118 Query 1938 GAATCACCCTCGACGATGATACTTACAGGTC-TATCCGGCGGCGCAGCGTCACCCGTCCC 1996 || |||||||| | || ||||| |||| | ||| |||||||| || |||| Sbjct 14119 GACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCA----TCCC 14174 Query 1997 GAA-ATAATTATCCGCCCATTCCTGCATCTCGTCAGGAACGTTAGTGAAAGAAGA--GAC 2053 || || | | | ||||| ||| ||| || || |||| ||||| || Sbjct 14175 TAACATTTTCAGCTGCCCA-----GCA-CTC------AA--TTGTTGAAGGAAGAACAAC 14220 Query 2054 TTGAAATGGAGGAACCCACGGTTCCGGAGCCTTTGCGAATATTCGTTCTAGGTTAGAGCG 2113 | ||| ||| ||| | ||||| |||| ||||||||| |||| || | Sbjct 14221 T--AAAAGGACTAACATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAAC 14278 Query 2114 GATGTTATGATTTTGTAATACAAAATCTTTTGGTTGTTCTTCCCTTAGAACCGCTAAGGC 2173 || ||||||| ||| |||| ||| | | ||| || ||| || | || | | || Sbjct 14279 TATATTATGATATTGAAATAGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGC 14338 Query 2174 AGATTGAACCGAACCTGCATTTAATGCTTTCGCATATGAATCATTAGCAGACTGCTGGCC 2233 || || || ||| |||| |||| ||| || |||||| | | || || Sbjct 14339 TTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACC 14398 Query 2234 TCCTCTGGCAGATCTGCCGTCGATTTGGAAATCTCCCCATTCGATTGTATCTCCGTCCTT 2293 |||||| ||||||| || |||||||| |||| ||||| ||| | ||| | ||| || Sbjct 14399 TCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTT 14458 Query 2294 GTCGATGTATGATTTGACGTCGGAGCTCGATTTAGCTCCCTGAATATTCGGATGGAAATG 2353 |||||||| || || || || |||||||| || | || || ||| ||| Sbjct 14459 CGCGATGTATTTCTTAACATCTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGG-TATG 14517 Query 2354 TGCTGACCGGGTT-GGGGAGACCAGGTCGAAGAATCTGTTATTCGTGCATTGGTACTTAC 2412 || || | || || || | |||||| ||| || | |||| ||| | Sbjct 14518 TGGTGCTAGTATTAGGATGGATGATATCGAAGTGTCTAGGGTTTCTAAATTGTGCCTTGC 14577 Query 2413 CTTCGAACTGAACAAGCACATGGAGATGAGGTTCCCCAT 2451 ||||||| |||| ||| ||||| |||| |||||||| Sbjct 14578 CTTCGAATTGAATAAGGGCATGGCTATGAAATTCCCCAT 14616 Score = 95.1 bits (104), Expect = 2e-16 Identities = 254/379 (67%), Gaps = 22/379 (6%) Strand=Plus/Plus Query 969 GAATCACACAGAGAACGCCTTGTTATTGTATATGGCATGCACTCATGCGTCTAACCCTGT 1028 || ||| || || || || ||||| |||||| | |||||||| ||||| ||||| Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1029 ATATGCAACTTTGAAAATTCGAATCTATTTTTAT--GATTCGATCACGAATTAATAAAAT 1086 |||| ||| ||| || || | ||||||||| || | |||| |||||||||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCA--AATTAATAAATA 13194 Query 1087 TTGAATTTTATTGAATGATTCTCCAATACA-----TGATT-TACATACACTCTGTTTGTT 1140 |||||||||||| ||||| || | |||| || || || || || | | Sbjct 13195 TTGAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAAT 13254 Query 1141 GCGAAACGTACAGCTCTAACTACATTGTTTATTGAAATAACACCTAATTGATCTAGATAC 1200 | ||||||||||| | |||||| || ||||||||||||| | |||| | | Sbjct 13255 ACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAAT 13314 Query 1201 ATGTTGACTAAATATCTAAAT-CTAGCTAAATAAATTG-AT-CCAGAAGCTGTCATCGAC 1257 | | || | || ||||| || || || ||| | || | || | || | ||| Sbjct 13315 TTCATTACACGAAATTTAAATACT--CTTAAGAAAACGTATGTCGGAGGACGTAAACGA- 13371 Query 1258 GTCGTCCAAACTTGGAAGTTCAGGTAGGCTTTGTGGAGATGCAACGCTTTCCTCAGGTTG 1317 |||| | | |||||| ||| | |||||||| |||| || | |||||||||||| Sbjct 13372 ---GTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTG 13428 Query 1318 TGGTTGAACCGTATCTGTA 1336 |||||||| || || |||| Sbjct 13429 TGGTTGAATCGAATTTGTA 13447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8211443632306