Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_002048.1 Length=2584 Score E Sequences producing significant alignments: (Bits) Value seq19028 210 4e-51 >seq19028 Length=31091 Score = 210 bits (232), Expect = 4e-51 Identities = 597/897 (67%), Gaps = 54/897 (6%) Strand=Plus/Plus Query 1431 TGTGAGGGTGATGAAGACAGCATTCTTTAGAGTCCAGTTTTTGAGAGACGCATTATCTTC 1490 ||||| |||| ||| | ||||| | | || ||| ||||| | ||| | ||| Sbjct 13776 TGTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTC 13835 Query 1491 TTTCTCGAGGAAAGCTTTATAGCTGGAACCCTCGCCAGGATTGCAGAGCACGATTGATGG 1550 | ||||||||| |||||||||||||| ||||||||||| | | ||||| || Sbjct 13836 CTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGG 13895 Query 1551 GATCCCTCCTTTAATTTGAACAGGCTTTCCGTACTTGCAATTTGATTG-CCAATCTTTTT 1609 ||||| || || || | |||||| ||||||| || | ||| | | ||||| ||| Sbjct 13896 TATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTT-ACCTTGCTGGACCAATTGCTTT 13954 Query 1610 GGGCCCCAATGAGTTCTTTCCAGTGCTTTAGCTTTAGATACTGCGGTGCGACGTCATCAA 1669 ||||||| || | ||||| |||||||||| ||| ||||| |||||| ||||| Sbjct 13955 GGGCCCCCATAAACTCTTTAAAGTGCTTTAG------ATAATGCGGATCGACGTTATCAA 14008 Query 1670 TGACGTTATATTCCA--CTTCATTCGAATAGACCCTAGAATTGAAATCAAGATGACCGCT 1727 ||| |||||| ||| | | ||| ||||| | || ||| ||||| | |||||||| Sbjct 14009 TGATGTTATA--CCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCA 14066 Query 1728 CAAGTAATTATGTGGGCCTAAGACCCGAGCCCACATCGTCTTCCCCGTTCGAGAGTCACC 1787 | |||||||||||| ||||| | |||||| |||||||| |||| ||| ||||| Sbjct 14067 TAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACC 14126 Query 1788 TTCAATGATAATACTAATAGGTCTTTCCCGG-CGCGCAGCGGCACTCCTTCCAAAATAGT 1846 ||||||| |||||| | |||| || || |||||||||||| ||| | || || | Sbjct 14127 CTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCA-TCC--CTAACATTTT 14183 Query 1847 CATCAGCCCACCTTAGCATCTCGTCCGGAACGTTAGTGAAAGAGGAGAGTGGAAACGGAG 1906 || | |||| |||| ||| || || |||| || || ||| ||| Sbjct 14184 CAGCTGCCC-----AGCA-CTC------AA--TTGTTGAAGGAAGAACAACTAAAAGGAC 14229 Query 1907 GAGCCCATGGTTCCGGA----GCATTTGCGAATATTCGTTC-AAGATTCGAACGAATGTT 1961 | | | ||||| ||| |||| ||||||||| || || || |||| || || Sbjct 14230 TAACATAAGGTTCAGGAGGGGGCAT----GAATATTCGATCTAATTTTGGAAC-TATATT 14284 Query 1962 ATGATTTTGAAGGACAAAGTCCTTCGGTTG---TTCTTCTCTCAATATATTGAGGGCCTC 2018 ||||| ||||| | ||| ||| | | | || |||||| | ||| || || || Sbjct 14285 ATGATATTGAAATAGAAA---CTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTC 14341 Query 2019 GGAGACCGTGCCTGAATTGAGGGCTTTGGCATATGAATCATTGGCAGTCTGGCAACCTCC 2078 | | | | | | |||| ||| || |||||| | || || ||||||| Sbjct 14342 TTCAATTGATGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCC 14401 Query 2079 TCTAGCTGATCGTCCATCGATCTGGAAAATTCCAAAATCAATGAAGTCTCCGTCTTTTTC 2138 |||||| |||||||||||||| || ||| | || | || || | || | |||||| | Sbjct 14402 TCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGC 14461 Query 2139 CACATAGGTCTTGACGTCTGAAGACGATTTAGCTCTCTGTATGTTCGGATGGAAATGTGC 2198 | || |||| || |||||||| |||||||| || | ||| || ||| ||||| Sbjct 14462 GATGTATTTCTTAACATCTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGG-TATGTGG 14520 Query 2199 TGACCTGGT-TGGGGAT--ACCAAGTCGAAGAATCGTTGATTGGTGCACTGGTACTTTCC 2255 || || || | |||| | | |||||| || | || | | || ||| || Sbjct 14521 TG--CTAGTATTAGGATGGATGATATCGAAGTGTCTAGGGTTTCTAAATTGTGCCTTGCC 14578 Query 2256 TTCGAACTGGATGAGAACGTGGAGATGAGGTTGCCCATCTTCGTGTAGTTCTCTTGA 2312 |||||| || || || | ||| |||| || |||||| | |||| || |||||| Sbjct 14579 TTCGAATTGAATAAGGGCATGGCTATGAAATTCCCCATCCTGGTGT--TTTTCTTGA 14633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8157063210900