Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_003199.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq19028 233 3e-58 >seq19028 Length=31091 Score = 233 bits (258), Expect = 3e-58 Identities = 373/527 (71%), Gaps = 25/527 (5%) Strand=Plus/Plus Query 1611 GCATTCTTTAAAGCCCAATTTTTTAGTGCAGAATTCTTCTCTTCATCCAAAAACTCTTTA 1670 ||||| | |||| ||||||||||| | | ||| || || || || | ||||||||| Sbjct 13795 GCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTA 13854 Query 1671 TAGCTAGAATTGGGTCCTGGATTGCAGAGGAAGATGGTGGGAATTCCGCCTTTAATTTGA 1730 ||||| ||| | || || |||||||| | |||||| || || || || || || || | Sbjct 13855 TAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTT 13914 Query 1731 ACTGGCTTCCCGTATTTTGTATTTGATTG-CCAGTCCTTTTGGGCCCCCATGAACTCCTT 1789 || ||| | ||||||||| || | | | ||| | ||||||||||||| ||||| || Sbjct 13915 ACAGGCCTTCCGTATTTTACCTT-GCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTT 13973 Query 1790 AAAGTGCTTTAGGTAATGTGGGTTGACGTCATCAATGACGTTAAACCAGGCGTCATTACT 1849 |||||||||||| ||||| || | ||||| |||||||| |||| ||||||| | ||| | Sbjct 13974 AAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATT--T 14031 Query 1850 GTATACCCTT--GGGCTCAGATCTAGATGTCCACACAGATAATTATGTGGACCTAATGAT 1907 | ||| || ||| ||||| ||| || || || ||||||||||| ||||| ||| Sbjct 14032 GAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGAT 14091 Query 1908 CTGGCCCACATCGTCTTCCCCGTCCTACTGTCACCCTCAATCACTACACTTATTGGTC-- 1965 || |||||| |||||||| || ||| ||||||||||| || | ||| | |||| Sbjct 14092 CTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGT 14151 Query 1966 TATTGGCCCGCGCAGCGGCACTGACGACGTTCTCGGCAGCCCA-CACTTCAAGTTCTTCT 2024 || ||| ||||||||||||| || || || || ||||| ||| |||| Sbjct 14152 TAATGG-CCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCAC-TCAA-------- 14201 Query 2025 GGAACTTGATCGAAAGAAGAAGAGGAAAAAGGAGAAACATAAGGAGCTGGTGGCTCCTGA 2084 ||| | ||| |||||| | ||||||| ||||||||| | || || | Sbjct 14202 -----TTG-TTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTCAGGAGGGGGCATG 14255 Query 2085 AAGATTCTGTCTAGATTTGCATTTAAATTATGAAATTGCAGTACAAA 2131 || |||| |||| |||| | || ||||||| |||| | || ||| Sbjct 14256 AATATTCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAAA 14302 Score = 104 bits (114), Expect = 4e-19 Identities = 246/367 (67%), Gaps = 11/367 (3%) Strand=Plus/Plus Query 951 GAATCATACGGAAAATGCGTTAATGCTTTATATGGCTTGTACTCACGCTAGCAACCCTGT 1010 || |||||| |||||||| || || ||||| || ||||| || || ||||| Sbjct 13080 GACTCATACTGAAAATGCATTGTTG---TATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1011 TTATGCTACGTTGAAGATTAGGATATATTTTTATGACTCTGTAACGAATTGATATTAATA 1070 ||| ||| ||| | | | ||||||||||| |||| | |||| ||| |||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATA--AATA 13194 Query 1071 AAGTTTAAATTTTATTTCTGAATATTGATCTACATACATAGTTTGTTGGATTACATTGTA 1130 || ||||||||||| ||||| | ||||| || ||||| | ||||||||| | Sbjct 13195 ----TTGAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAA 13250 Query 1131 CAATACATGTTCTACAGCTTTAATAACTAAATTAATTGAAATTACACCGAGATTGTTC-A 1189 ||||||| ||||||||| |||||| ||||| ||| ||||| | || | || | Sbjct 13251 TAATACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTA-ATCGGTCTA 13309 Query 1190 GATATTTGAGGACTTGGTTTTTGAATACCCTTAAGAAAAGACCAGTCTGAGGCTGTAAGG 1249 | |||| | || | ||| ||||| |||||||||| ||| |||| |||| Sbjct 13310 AAAATTTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAAC 13369 Query 1250 TCGTCCAGATTCGGAAGGTTAGAAAACACTTGTGCAGTCCCAGAGCTTTCCGCGTGTTGT 1309 |||| ||| |||| | || ||| ||||| || ||| | |||| | ||||| Sbjct 13370 GAGTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGT 13429 Query 1310 AGTTGAA 1316 |||||| Sbjct 13430 GGTTGAA 13436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8700867424960