Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_003357.1 Length=2737 Score E Sequences producing significant alignments: (Bits) Value seq19028 239 8e-60 >seq19028 Length=31091 Score = 239 bits (264), Expect = 8e-60 Identities = 310/426 (73%), Gaps = 3/426 (1%) Strand=Plus/Plus Query 1590 AATGGTTCCGTGAGGGTGATGAATTCTGCATTCTTTATTGCCCACGCTTTGAGTGCTGAA 1649 ||||||| |||| |||| |||||||||||| | | | ||| ||| | | | Sbjct 13768 AATGGTTGTGTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATA 13827 Query 1650 TTCTTGTCCTCGTCCAAGTACTCTTTATATGATGACGTAGGGCCTGGATTGCAGAGGAAG 1709 || || ||||| || | | |||||||||| || ||||| || |||||||| | |||| Sbjct 13828 TTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1710 ATAGTGGGAATTCCACCTTTAATTTGAATTGGCTTCCCGTACTTCGTGTTGCTTTGCCAG 1769 || || || || ||||| || || | | ||| | ||||| || ||||| ||| Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAA 13947 Query 1770 TCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGGTCCACGTCATCA 1829 | |||||||||||||| || ||||||||||||||||| || || || || |||| |||| Sbjct 13948 TTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCA 14007 Query 1830 ATGACGTTGTACCACGCATCATTGCTGTACACTTTTGGACTCAGGTCGAGATGACCACAT 1889 |||| ||| ||||| |||| ||| || | ||| | ||| || | |||||| ||| Sbjct 14008 ATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCAT 14067 Query 1890 AAATAATTGTGTGGGCCCAATGATCTGGCCCACATTGTCTTCCCTGTACGACTCTCGCCC 1949 | ||||| ||||| || || ||||| |||||| |||||||||||| | | ||| ||| Sbjct 14068 AGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCC 14127 Query 1950 TCTATTACAATACTATTAGGTC-TCCATGGCCGCGCAGC--ATTCCCGTACATTATCAGC 2006 || || |||||||| || |||| | ||||||||||||| |||| ||||| ||||| Sbjct 14128 TCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGC 14187 Query 2007 AGCCCA 2012 ||||| Sbjct 14188 TGCCCA 14193 Score = 179 bits (198), Expect = 6e-42 Identities = 263/361 (73%), Gaps = 11/361 (3%) Strand=Plus/Plus Query 963 TCATACTGAGAATGCGTTGTTATTGTATATGGCTTGTACCCATACGAGTAATCCAGTGTA 1022 ||||||||| ||||| ||||| |||||| || || ||| | |||||| || || Sbjct 13083 TCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 1023 TGCAACTTTGAAGATCAGG-ATCTATTTTTATGATTCTGT-TCAGAATTAATAAAGATTG 1080 | ||| ||| || || | | ||||||||||| ||| ||| |||||||||| |||| Sbjct 13140 TTGTACTATGA-GAACACGCAGTTATTTTTATGAGAGTGTATCA-AATTAATAAATATTG 13197 Query 1081 AATTTTATTATGTTAGAATGTGTTACATACTCTGTTTTTTCCAATACATCCCATAATACA 1140 ||||||||| | | | | ||||| | |||||| || | ||||| |||||||| Sbjct 13198 AATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACA 13257 Query 1141 T-GACTACATGCTCTAATTGCATTATTAATGCTAATTACACCCAAATTATCTAAATATTT 1199 | | ||||| |||||||| ||| ||||| ||||| ||||| || |||||| |||| Sbjct 13258 TTGTCTACA-GCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1200 CAT-ACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGACGTAAATGAGTCC 1258 ||| ||| ||| ||||||||||||||||| | ||| ||||||||||| |||||| Sbjct 13317 CATTACAC-GAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCC 13375 Query 1259 AGATCTGGAAGCTCAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGA 1318 ||||| |||| | || ||| | ||| | || | ||||||||||||||||||| Sbjct 13376 TGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGA 13435 Query 1319 A 1319 | Sbjct 13436 A 13436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8646487003554