Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_003434.1 Length=2746 Score E Sequences producing significant alignments: (Bits) Value seq19028 309 5e-81 >seq19028 Length=31091 Score = 309 bits (342), Expect = 5e-81 Identities = 484/689 (70%), Gaps = 19/689 (3%) Strand=Plus/Plus Query 1606 GCATTCTTTAAAGCCCAATTTTTGAGAGCATTATTCTTCTCTTCATCCAAGAACTCTTTA 1665 ||||| | |||| ||||||||| | | |||| || || || || | |||||||||| Sbjct 13795 GCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTA 13854 Query 1666 TAACTTGAATTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGA 1725 || || ||| |||| || |||||||| | |||||| || || || || || || || | Sbjct 13855 TAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTT 13914 Query 1726 ACTGGCTTTCCGTACTTGGTAT-TTGATTG-CCAGTCCCTTTGGGCCCCCATGAATTCCT 1783 || ||| ||||||| || || ||| | | ||| | |||||||||||||| || || | Sbjct 13915 ACAGGCCTTCCGTATTT--TACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAACTCTT 13972 Query 1784 TAAAGTGCTTTAGGTAGTGAGGATCTACGTCATCGATGATGTTATACCACGCATCATTGC 1843 ||||||||||||| || || ||||| |||| ||| |||||||||||||| |||| ||| Sbjct 13973 TAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTG 14032 Query 1844 TGTAAACTTTGGGGCTTAGATCTAAATGACCGCATAGGTAATTATGAGGCCCTAATGACC 1903 |||| ||| | | ||||||||||||||||||||||||||| || ||||| || | Sbjct 14033 AATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATC 14092 Query 1904 TAGCCCACATCGTTTTACCCGTACGACTGTCTCCCTCAATTACTATACT-TTGAGGCCTC 1962 | |||||| || || || || | | || |||||||| || ||||| ||| | | | Sbjct 14093 TTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTT 14152 Query 1963 AGAGGCCGCGCAGCGGCATTCATGACATTTTCTGAGACCCATTCTTCAAGTTCTTCAGGA 2022 | |||||||||||||||| | | |||||||| | |||| |||| Sbjct 14153 AATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCACTCAA----------- 14201 Query 2023 ACTTGATCAAAAGAAGAAGATAAAAAAGGCGAAACATAAACCTCCAACGGAGGAGTAAAA 2082 ||| | || |||||| | |||||| ||||||| || || || | || Sbjct 14202 --TTG-TTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTCAGGAGGGGGCATGAAT 14258 Query 2083 ATCCTATCTAAATTAGAATTTAAATTATGATATTGAAAAATAAATTTTTCTGGGAGTTTC 2142 || | |||||| || | | || ||||||||||||||| | ||| ||| |||| | ||| Sbjct 14259 ATTCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAAACTTTGCTGGCATTTTT 14318 Query 2143 TCCTTTATTATAGCCATTGCAGCTTCTTTAGAACCTGCATTTAGGGCTTCTGCAGCAGCA 2202 || | || |||| | || |||| | || ||| ||| |||||||||| || Sbjct 14319 TCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATACA 14378 Query 2203 TCATTAGCTGTCTGTTGACCTCCTCGTGCAGATCTCCCATCGATCTGGAACTCTCCCCAT 2262 ||||| | ||| ||| |||||||| ||||||| |||||||| || || | ||||| Sbjct 14379 TCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAG 14438 Query 2263 TCGAGGGTGTCTCCGTCCTTGTCGATGTA 2291 ||| | || | ||| || ||||||| Sbjct 14439 TCGGTGTAATCACAGTCTTTCGCGATGTA 14467 Score = 132 bits (146), Expect = 8e-28 Identities = 251/369 (68%), Gaps = 3/369 (1%) Strand=Plus/Plus Query 952 GAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCAGT 1011 || |||| |||| ||||| || ||||||||| | |||||||| ||||| || || Sbjct 13080 GACTCATACTGAAAATGCATT---GTTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1012 GTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCTGTAACAAATTAATAAATATT 1071 ||| |||| ||| | ||| | ||||| ||||| |||| |||||||||||||||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1072 GAATTTTATTGAATAAGATTGGTCTACATATACAATGTGTTCTAATACATCCCATAATAC 1131 |||||||||| || | ||| ||||| || | || || | ||||| ||||||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1132 ATGATCAACTGCACGAATTACATTATTAATACTGATAATTCCTAAATTATTTAAATATTT 1191 || || || || | ||| | ||| |||||||| |||| ||||| | |||| |||| Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1192 AAGCACTTGGGTCTTAAAGACCCTTAAGAATTGCCCAGTCGGAGGCTGTGAAGTCATCCA 1251 | || | ||||| || |||||||| |||||||| || || ||| Sbjct 13317 CATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCT 13376 Query 1252 GATTCGGTAGGCTAGAAAACACTTGTGTATCTCCAACGCTTTCCTCAGGTTGTAATTGAA 1311 ||| | || || ||| ||||| | | || | ||||||||||||| ||||| Sbjct 13377 GATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436 Query 1312 CTGTATTTG 1320 | ||||| Sbjct 13437 TCGAATTTG 13445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8675276638416