Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_003504.1 Length=2603 Score E Sequences producing significant alignments: (Bits) Value seq19028 120 5e-24 >seq19028 Length=31091 Score = 120 bits (132), Expect = 5e-24 Identities = 261/380 (69%), Gaps = 28/380 (7%) Strand=Plus/Plus Query 829 TCATACTGAAAATGCATTATTATTGTATATGGCATGTACTCATGCTTCTAATCCTGTGTA 888 |||||||||||||||||| || |||||| | |||||||| ||||||||||| || Sbjct 13083 TCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 889 TGCTACATTGAAAATTCGGATCTATTTTTACGATTCGATAACCAATTAATAATATTTGAA 948 | ||| ||| || || | |||||||| || || | ||||||||| ||||| Sbjct 13140 TTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAA 13199 Query 949 TTTTATTGAATGATTTTCTATTACAT--AATTT----ACATATGGTTTGTCTGTTGCGAA 1002 ||||||| ||||| ||| | ||||| | | | || | ||| | | | Sbjct 13200 TTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACATT 13259 Query 1003 ACGAACAGCTCTTATAACGTTATTAATTCCAACAACACCTATTCTGTCT--AGATACAAT 1060 |||||||| |||| || ||||| | || |||||||| || |||| | || || Sbjct 13260 GTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCAT 13319 Query 1061 AAAACTAAATACTTAAAT-CTCT---GTAAA--TAAGTCGTTCCAGAAGCTTGAACTGAC 1114 | || |||| |||||| |||| | ||| || |||| || | | | ||| || Sbjct 13320 TACACGAAAT--TTAAATACTCTTAAGAAAACGTATGTCG---GAGGA-CGTAAAC-GA- 13371 Query 1115 GTCGTCCAGATTTGGAAATTCAGGAAAGCTTTGTGTAGATTCAGTGACTTCCTTAGGTTG 1174 |||| ||| | ||| || |||||||||||||| ||||||||| |||||| |||||| Sbjct 13372 ---GTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTG 13428 Query 1175 TAATTGAACCGGATTTGGAT 1194 | ||||| || ||||| || Sbjct 13429 TGGTTGAATCGAATTTGTAT 13448 Score = 111 bits (122), Expect = 3e-21 Identities = 238/354 (67%), Gaps = 10/354 (3%) Strand=Plus/Plus Query 1498 TTTTCCTCTTTGTCGAGGAAATCTTTATAACTGGCCCCCTCTCCTGGATTGCACAGCACG 1557 |||||||| | ||||||| |||||||| |||| || |||||||||| | | Sbjct 13831 TTTTCCTCCT---CGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1558 ATTGATGGTATCCCGCCTTTAATTTGAACCGGCTTTCCATATTTGCAGTTGGATTGCCAG 1617 |||| |||||||| || || || | || ||| |||| ||||| ||| ||| Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAA 13947 Query 1618 TCTCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAGCTTTAGGTATTGCGGACTGATG 1677 | ||||||||||| || || ||||| ||| ||||||| || |||||| || | Sbjct 13948 TTGCTTTGGGCCCCCATAAACTCTTTAAAGT------GCTTTAGATAATGCGGATCGACG 14001 Query 1678 TCATCGATGACGTTATACTCAACCTCGTTAGAGTACACTGAAGAATTGAAATCCAGGTGT 1737 | ||| |||| ||||||| | | || || || | | | ||| ||||| | || Sbjct 14002 TTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGA 14061 Query 1738 CCACTAAGATAATTGTGTGGTCCTAATGCACGAGCCCACATGGTTTTTCCGGTACGTGAA 1797 || | || ||||| ||||||||||| | | |||||| || || || || | || Sbjct 14062 CCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGAC 14121 Query 1798 CCACCTTCGACGATGATACTAATAGGTC-TCTCCGCCCGCGCAGCGGCACCCCT 1850 |||| || | || ||||| | |||| | | ||||||||||||| |||| Sbjct 14122 TCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCT 14175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8217841328942