Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_003556.1 Length=2766 Score E Sequences producing significant alignments: (Bits) Value seq19028 226 5e-56 >seq19028 Length=31091 Score = 226 bits (250), Expect = 5e-56 Identities = 529/789 (67%), Gaps = 32/789 (4%) Strand=Plus/Plus Query 1810 ATTCTTTTCTTCGTCCAGAAATTCCGTATATGAAGACGTTGGACCTGGATTGCAGAGGAA 1869 ||| ||||| || || || || || |||| || || ||||| |||||||| | ||| Sbjct 13827 ATTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAA 13886 Query 1870 GATTGTTGGGATTCCACCTTTAATTTGAATTGGCTTCCCGTACTTCGTGTTGCTTTGCCA 1929 |||||| || || ||||| || || | | ||| | ||||| || ||||| ||| Sbjct 13887 GATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCA 13946 Query 1930 GTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGATAGTGGGGGTCTACATCATC 1989 | |||||||||||||| || |||||||| ||||||||||| || || || || | ||| Sbjct 13947 ATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATC 14006 Query 1990 AACGACGTTGTACCATGCGTCGTTGCTGTAGATCTTCGGACTCAGATCCAGATGACCGCA 2049 || || ||| ||||| || | || || || || | ||| ||| | ||||||||| Sbjct 14007 AATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCA 14066 Query 2050 TAGGTAGTTATGTGGACCTAACGACCTAGCCCACATCGTTTTTCCTGTCCTACTGTCACC 2109 |||||| |||||||| ||||| || || |||||| || || ||||| ||| ||||| Sbjct 14067 TAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACC 14126 Query 2110 CTCTATGACAATACTAATCGGTC-TCCATGGCCGCGCA---GAAGACTTCACGTTTTCTG 2165 ||| ||||||||||| | |||| | ||||||||||| | | | | || ||||| | Sbjct 14127 CTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAG 14186 Query 2166 CAGCCCATTCCTCAAGTTCTTCAGGAACTTGATCAAATGAAGAACTAGAAAAAGGACAAA 2225 | ||||| ||||| ||| | || ||||||| | |||||||| || Sbjct 14187 CTGCCCAGCACTCAA-------------TTG-TTGAAGGAAGAACAACTAAAAGGACTAA 14232 Query 2226 CAAAAACCTCCAATGGAGGAGCA--AAAATCCTATCTAAATTTGAATTTAAATTATGAAA 2283 || || || | | || ||| || || | |||||| |||| | || ||||||| | Sbjct 14233 CATAAGGTTC--AGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATA 14290 Query 2284 TTGTAAAACAAAATCTTTG--GGAGCTTTCTCCCTTAATATATTGAGTGCCGATGACTTT 2341 ||| ||| | || ||||| || ||| || || | ||| || || | || Sbjct 14291 TTG--AAATAGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATT 14348 Query 2342 GATCCTGAGTTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCCCTAGCT 2401 ||| | | | || || ||| || | || || | | || ||||||| ||||| Sbjct 14349 GATGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCA 14408 Query 2402 GATCTTCCATCGACTTGGAAAACTCCAAAATCAAGGATGTCTCCGTCTTTCTCCATGTAG 2461 |||| |||||||| ||| ||| || | || | || | ||||||| | ||||| Sbjct 14409 GATCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTAT 14468 Query 2462 GACTTGACATCTGACGAGCTTTTAGCCGCCTGAATGTTCGGATGGAAATGTGCTGACCTA 2521 ||| |||||||| || |||||| | || | ||| || ||| ||||| || ||| Sbjct 14469 TTCTTAACATCTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGG-TATGTGGTG--CTA 14525 Query 2522 CT-TGGGGAT--ACGAGGTCGAAGAATCGTTGATTTTTGCATTGGTATTTTCCTTCGAAT 2578 | | |||| | || |||||| || | ||| | |||| || ||||||||| Sbjct 14526 GTATTAGGATGGATGATATCGAAGTGTCTAGGGTTTCTAAATTGTGCCTTGCCTTCGAAT 14585 Query 2579 TGGATGAGG 2587 || || ||| Sbjct 14586 TGAATAAGG 14594 Score = 141 bits (156), Expect = 2e-30 Identities = 267/388 (69%), Gaps = 11/388 (3%) Strand=Plus/Plus Query 1118 GAATCATACTGAGAACGCATTAATATTGTATATGGCTAGT---ACTCATGCCAGTAATCC 1174 || ||||||||| || ||||| |||||||| |||| |||||||| |||||| Sbjct 13080 GACTCATACTGAAAATGCATTG---TTGTATAT---TAGTTCAACTCATGCATCTAATCC 13133 Query 1175 CGTGTATGCAACTTTGAAAATCAGGTTCTATTTTTATGATTCTGT-TCAGAATTAATAAA 1233 || ||| ||| ||| || | ||||||||||| ||| ||| |||||||||| Sbjct 13134 TGTATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCA-AATTAATAAA 13192 Query 1234 TTTTATATTTTATATCATGAAATGTCCGTACATACAATGTTCCTTGTAATCTATTATACA 1293 | || ||||||| |||||| || |||||| || |||| | | | ||| | | Sbjct 13193 TATTGAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATA 13252 Query 1294 ATACATGATCAACTGCTCTAATTACATTATTAATTGAAATCACACCCAGACTATCTAAGT 1353 |||||| || || |||||||| | ||| ||||| ||| ||||| | | ||||| Sbjct 13253 ATACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAA 13312 Query 1354 AGTTCATCACTTGTGTCCTAAAGACCCTCAAGAAATGCCATGTCTGAGGATGTAAGCGGC 1413 | ||||| || | |||| || || |||||| ||||| ||||| |||| || Sbjct 13313 ATTTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAG 13372 Query 1414 TCCAGATCTTGAAAATGAGGAAACACTTGTGCAAACCCAGCTGGGATCTGAGGTTGTGGT 1473 ||| ||||||||| |||||||| ||||| | | ||| | || |||||||||| Sbjct 13373 TCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGT 13432 Query 1474 TGAACTGTATCTGTATTGTTATTACGTC 1501 |||| | || |||||| |||| ||| Sbjct 13433 TGAATCGAATTTGTATTTCGATTATGTC 13460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8735962249295