Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_003664.1 Length=2622 Score E Sequences producing significant alignments: (Bits) Value seq19028 140 5e-30 >seq19028 Length=31091 Score = 140 bits (154), Expect = 5e-30 Identities = 221/313 (71%), Gaps = 9/313 (3%) Strand=Plus/Plus Query 1557 CCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACCGGCTTTCCGTAC 1616 ||||||||||| | | ||| || || ||||| || || | || ||| ||||||| Sbjct 13870 CCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTAT 13929 Query 1617 TTGCAGTTTGATTG-CCAATCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAGTTT 1675 || | ||| | | ||||| ||||||||||| || || ||||| ||||||||| Sbjct 13930 TTT-ACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTA---- 13984 Query 1676 TAGATAATGCGGTGCGACATCATCAATGACGTTATACTGCACATCGTTTGAGTAGACCTT 1735 |||||||||| |||| | |||||||| ||||||| ||| ||||| || | || Sbjct 13985 --GATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTT 14042 Query 1736 TGAATTGAAATCGAGGTGACCACTCAAGTAATTATGGGACCCCAATGTACGTGCCCACAT 1795 ||| ||||| | ||||| | | ||||||||| | || || | | ||||||| Sbjct 14043 ATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTC 14102 Query 1796 TGCCTTCCCCGTCCTTGAATCACCCTCGATTATTATACTGATAGGTC-TCTCCGGCCGCG 1854 || |||||| || || || |||||||| || | ||||| | |||| | ||||||| Sbjct 14103 TGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCG 14162 Query 1855 CAGCGGCATCTCT 1867 |||||||||| || Sbjct 14163 CAGCGGCATCCCT 14175 Score = 113 bits (124), Expect = 7e-22 Identities = 401/620 (65%), Gaps = 45/620 (7%) Strand=Plus/Plus Query 843 GAATCATACTGAGAACGCACTATTACTGTATATGGCATGTACTCATGCCTCTAACCCAGT 902 || ||||||||| || ||| | || |||||| | |||||||| ||||| || || Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 903 GTATGCAACTTTAAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAATAAAGTTT 962 ||| ||| | | || || | ||||||||||| || |||||||||||| || Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 963 GTATTTTATTGAATGATCTTCGAGTACAGC----ATTTACATATTGTC--TGTCTGTTGC 1016 | |||||||| ||||| ||| |||||| | ||| | | | | || | | | Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1017 GAATCG--AACAGCTCTAATTACATTATTAATTGAAATAACGCCTAACTGATCAATATAC 1074 || | ||||||||||| | ||| ||||| |||||| ||||| | || | | | Sbjct 13257 --ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAAT 13314 Query 1075 AACACTACTAAATATTTAAAT-CTATTTA-AATATGTCATCCCAGAAGCTCTCAGGGATG 1132 || ||| | |||||||| || || | || | || || | || | | | || Sbjct 13315 TTCATTACACGAAATTTAAATACTCTTAAGAAAACGT-ATGTCGGAGGACGTAAACGA-- 13371 Query 1133 TCGTCCAGATTTGGAAGTTGAGATAAGCCTTGTGAAGACCCAGTACTCTCCTCAGGTTGT 1192 |||| ||| | ||||||||| |||| ||||||||| |||| | |||||||||||| Sbjct 13372 --GTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGT 13429 Query 1193 GATTGAACCGGATCTGTACGTGGTACACTCTGGTCCTCG----TGTACAGTATGTCCTCG 1248 | ||||| || || |||| | | | ||| ||| ||| || || | | Sbjct 13430 GGTTGAATCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTGT-TGGTCTGAGATTG 13488 Query 1249 ACATTGTACATCTTGAAATAAAG-GGGATTTGATATTTCCCAGATA-------------- 1293 ||| ||||||||||| || | | |||||||||| ||| Sbjct 13489 TGGTTGAGGATCTTGAAATATAGAAACAGCTAATATTTCCCAAATATGTGGTTGACGTAA 13548 Query 1294 -----TACACGCCATTCTCTGCCTGATGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCA 1348 || ||||||||| || || || ||||||||| ||||||||||||| ||||| Sbjct 13549 ACGACTAGACGCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATCCA 13608 Query 1349 TGTCCTGCGCAGTCAATGTGTACGAAAATGGAGCACCCGCACTGCAAATCAATTCGTCTT 1408 || || | ||| ||| | | ||| || || || || || ||| || | ||||||| Sbjct 13609 TGACCAGAACAGCTAATATTTTTGAATATTGAACATCCACAAGGCAGGTCTAGTCGTCTT 13668 Query 1409 CTTCGGATAGCTCTCTTTTT 1428 |||| ||| |||||| || Sbjct 13669 CTTCTGATTTGTCTCTTCTT 13688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8278619446984