Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_003722.1 Length=2743 Score E Sequences producing significant alignments: (Bits) Value seq19028 300 3e-78 >seq19028 Length=31091 Score = 300 bits (332), Expect = 3e-78 Identities = 567/825 (69%), Gaps = 27/825 (3%) Strand=Plus/Plus Query 1607 GCATTCTTTAAAGCCCAATTTTTAAGAGCTGTATTTTTCTCTTCATCCAAGAATTCTTTA 1666 ||||| | |||| ||||||||| | ||||||| || || || | ||| |||||| Sbjct 13795 GCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTA 13854 Query 1667 TAGCTAGAGTTGGGTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTGA 1726 ||||| || | || || |||||||| | ||||| || || || || || || || | Sbjct 13855 TAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTT 13914 Query 1727 ACTGGCTTCCCGTACTTGGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTA 1786 || ||| | ||||| || ||||| ||| | |||||||||||||| || |||||| Sbjct 13915 ACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTTA 13974 Query 1787 AAGTGCTTTAGGTAGTGCGGATCTACGTCATCAATGACGTTATACCAAGCATCATTATTG 1846 ||||||||||| || |||||||| |||| |||||||| ||||||||| |||| ||| Sbjct 13975 AAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGAA 14034 Query 1847 TACACCTTAGGGCTTAGATCTAAATGACCACACAAGTAATTATGTGGTCCCAATGACCTG 1906 || | ||| | | |||||||||||| || | ||||||||||||||| || || || Sbjct 14035 TAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTT 14094 Query 1907 GCCCACATCGTCTTCCCTGTTCTACTGTCACCCTCTATGACTATACTCATGGGTC-TCAA 1965 |||||| ||||||||||||||| |||||||| ||||| |||||| |||||| | || Sbjct 14095 GCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAA 14154 Query 1966 TGGCCGCGCAGCGGCACTGACGACATTCTCGGCAGCCCATTCGTCAAGTTCTTCTGGAAC 2025 |||||||||||||||| ||||| || || ||||| |||| Sbjct 14155 TGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCACTCAA------------- 14201 Query 2026 TTGATCGAAAGAAGAAGATAAAAAAGGAGAAATGTATTCCTCTATCGGGGGAGTAAAAAT 2085 ||| | ||| |||||| | ||||||| || || || ||||| | || || Sbjct 14202 TTG-TTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTCAGGAGGGGGCATGAATAT 14260 Query 2086 CCTATCTAAATTAGAATTTAAATTATGAAACTGTAATACAAAATCTTTAGGGGCCTTTTC 2145 | |||||| || | | || ||||||| | || |||| ||| |||| ||| |||| Sbjct 14261 TCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAAA--CTTTGCTGGCATTTTT 14318 Query 2146 CCT-TAGTATATTGAGGGCCGAAGCTT---TGGACCCTGAATTGATTGCCTCGGCATATG 2201 || || || || || | || ||| | || | | | | || || ||| || Sbjct 14319 TCTCTAATA-ATAGAAAG-CGCTTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATA 14376 Query 2202 CGTCGTTGGCAGATTGGCAACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAATTCCAT 2261 | || || | | || ||||||||||||| |||| ||||||||| || ||| | || Sbjct 14377 CATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCC 14436 Query 2262 GATCAAGGACGTCTCCGTCTTTTTCCATGTATGTTTTAACATCTGTTGAGCTTTTAGCTC 2321 || | || | |||||| | |||||| | |||||||||| || |||||| Sbjct 14437 AGTCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGAAGATGATTTAGCGG 14496 Query 2322 CCTGAATGTTCGGATGGAAATGTGCTGATCGGGTTGGGGATG--TGAGATCGAAGAATCT 2379 || | ||| || ||| ||||| || | | || ||||| ||| ||||||| ||| Sbjct 14497 ATTGGAAGTTTGGGTGG-TATGTGGTGCTAGTATT-AGGATGGATGATATCGAAGTGTCT 14554 Query 2380 TTGGTTTTTACACTGGAATTTTCCTTCGAATTGGATGAGGACATG 2424 ||||| || | || || ||||||||||| || ||| |||| Sbjct 14555 AGGGTTTCTAAATTGTGCCTTGCCTTCGAATTGAATAAGGGCATG 14599 Score = 120 bits (132), Expect = 5e-24 Identities = 160/222 (72%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 956 TCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTA 1015 |||| |||| ||||| || ||||||||| | |||||||| ||||| ||||| || Sbjct 13083 TCATACTGAAAATGCATT---GTTGTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 1016 TGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAATAAATATTAAA 1075 | |||| ||| | ||| | ||||| ||||| ||| |||||||||||||||| || Sbjct 13140 TTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAA 13199 Query 1076 TTTTATTGAATAAGATTGGTCTACATATACAATGTGTTCTAATACATCCCATAATACATG 1135 ||||||| || | ||| ||||| || | || || | ||||| ||||||||| Sbjct 13200 TTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACATT 13259 Query 1136 ATCAACTGCACGAATTACATTATTAATACTGATAATTCCTAA 1177 || || || | ||| | ||| |||||||| |||| ||||| Sbjct 13260 GTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAA 13301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8665680093462