Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_003856.1 Length=2607 Score E Sequences producing significant alignments: (Bits) Value seq19028 141 2e-30 >seq19028 Length=31091 Score = 141 bits (156), Expect = 2e-30 Identities = 409/618 (66%), Gaps = 41/618 (7%) Strand=Plus/Plus Query 842 GAATCACACAGAGAATGCTCTGTTATTGTATATGGCATGTACTCATGCTTCTAATCCTGT 901 || ||| || || ||||| |||| |||||| | |||||||| ||||||||||| Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 902 GTATGCTACTTTGAAAATTCGGATCTATTTTTATGATTCGATTATGAA-TTAATAAAATT 960 ||| |||| ||| || || | ||||||||||| | ||| || |||||||| | Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGA-GTGTATCAAATTAATAAATAT 13195 Query 961 TGAATTTTATTTCATGATTTTCTAATACAT---CTGTTACAT--AAGAC-TTGTCTGTTG 1014 |||||||||||||||||| ||| | ||||| ||||| | | || ||| | | Sbjct 13196 TGAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATA 13255 Query 1015 CATAATGAACAGCTCCAAGTACATTGTTAATTGATACAACACCTATGTTATTTAAATATG 1074 ||| | ||||||| || | ||||||||| | |||||||| | |||| || Sbjct 13256 CATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATT 13315 Query 1075 ACATTACAAGGAATTTGAATCTACTTAA-ATATATCATCCCAGAAGCTGTCAGAGAAGTC 1133 ||||||| | ||||| ||| ||||| | | || | || | || | || Sbjct 13316 TCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGA---- 13371 Query 1134 GTCCAGACTTGGAAGTTGAAGTAGGCTTTGTGAAGATTCAATTTCTTCCGAAGGTTGTAA 1193 |||| || | |||||||| | | |||||||||||||||| || ||||| ||||||| Sbjct 13372 GTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGG 13431 Query 1194 TTGAACCTTATCTGAAGGT-GATACACCCTGCTG-CG--TGTGTACATTGGATCCTCTAC 1249 ||||| | || || | | ||| | | || || | ||| | || | | Sbjct 13432 TTGAATCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTGTTGGTCTGAGATTGTGG 13491 Query 1250 TTGGAGTATCTTGAAATAGAG-GGGATTTGGAACTTCCCAAATA------------AAA- 1295 || ||| ||||||||||| || | | | |||||||||| ||| Sbjct 13492 TT-GAGGATCTTGAAATATAGAAACAGCTAATATTTCCCAAATATGTGGTTGACGTAAAC 13550 Query 1296 ------ACGCCACTCGTTGCTTGAACTGCAGTGATGGGTTCCTCTGTGCGTGAATCCATG 1349 |||||| || | ||||| ||||||||| |||| |||||||| ||||||| Sbjct 13551 GACTAGACGCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATCCATG 13610 Query 1350 ATTAGCACAGTTAATGTGGATGTATATTGAACAGCCACAGTTGAGGTCAACTCGTCGTCG 1409 | || |||| |||| | || |||||||||| ||||| ||||| | ||||| || Sbjct 13611 ACCAGAACAGCTAATATTTTTGAATATTGAACATCCACAAGGCAGGTCTAGTCGTCTTCT 13670 Query 1410 CCTGATTGCTCTCTTCTT 1427 |||||| ||||||||| Sbjct 13671 TCTGATTTGTCTCTTCTT 13688 Score = 141 bits (156), Expect = 2e-30 Identities = 278/403 (69%), Gaps = 11/403 (3%) Strand=Plus/Plus Query 1462 TGTGAGGGTGATGAAGATGGCATTATGTATTGTCCAGTTTTGTAATGCCTGATTTTCTTG 1521 ||||| |||| ||| |||||||| | | ||| |||| |||| ||||| || Sbjct 13776 TGTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTC 13835 Query 1522 TTTATTAAGGAAATCTTTATAGCTGGAGCCCTCACCAGGATTGCATAGCACGATTGATGG 1581 | | ||||| |||||||||||||| |||||||||||| | | ||||| || Sbjct 13836 CTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGG 13895 Query 1582 AATGCCCCCTTTAATTTGAACTGGCTTTCCATACTTACAGTTTGACTG--CCAGTCTTTC 1639 || || || || || | || ||| |||| || || | ||| ||| ||| | | Sbjct 13896 TATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTT-ACCTTG-CTGGACCAATTGCTT 13953 Query 1640 TGGGCCCCAATTAATTCTTTCCAATGCTTTAATTTCAAATAGCTAGGGCTGACATCATCA 1699 |||||||| || || ||||| | ||||||| | ||| || || ||| | |||| Sbjct 13954 TGGGCCCCCATAAACTCTTTAAAGTGCTTTAGAT---AAT-GC--GGATCGACGTTATCA 14007 Query 1700 ATGACGTTATATTCTACGTCATTCGAATAGACCCTAGAATTGAAATCCAGATGACCTGAC 1759 |||| |||||| | | ||| ||||| | || ||| ||||| | |||||| | Sbjct 14008 ATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCAT 14067 Query 1760 AGATAATTATGCTTTCCTAATGATCTTGCCCACATTGTCTTGCCGGTTCTTGAATCACCT 1819 || |||||||| |||||| |||||||||||| |||||| || ||||| || ||||| Sbjct 14068 AGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCC 14127 Query 1820 TCGACGATGATACTAATAGGTC-TCTCTGGCCGCGCAGCGGCA 1861 || | || ||||| | |||| | |||||||||||||||| Sbjct 14128 TCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCA 14170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8230636722214