Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_003865.1 Length=2663 Score E Sequences producing significant alignments: (Bits) Value seq19028 141 2e-30 >seq19028 Length=31091 Score = 141 bits (156), Expect = 2e-30 Identities = 211/298 (71%), Gaps = 10/298 (3%) Strand=Plus/Plus Query 1539 TCGAGGAAATCTTTATAGCTGGCCCCCTCTCCAGGATTGCACAGCACGATTGAAGGGATA 1598 |||||||| ||||||||||||| ||||||||||||| | ||||| || || Sbjct 13840 TCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATC 13899 Query 1599 CCGCCTTTAATTTGAACTGACTTTCCATATTTACAGTTGGACTG--CCAGTCCCTCTGGG 1656 || || || || | || | | |||| ||||| ||| ||| ||| | || |||| Sbjct 13900 CCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTG--CTGGACCAATTGCTTTGGG 13957 Query 1657 CCCCAATCAATTCTTTCCAGTGCGTTAGCTTTAAATAATGCGGAGCGACGTCATCAATGA 1716 |||| || || ||||| ||| |||||| |||||||||| |||||| |||||||| Sbjct 13958 CCCCCATAAACTCTTTAAAGT------GCTTTAGATAATGCGGATCGACGTTATCAATGA 14011 Query 1717 CGTTATACTTGACGTCATTTGAGAACACCCTAGAATTGAAATCCAGATGACCACTCATAT 1776 ||||||| | | | |||||| | | || ||| ||||| | |||||| | | | Sbjct 14012 TGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGT 14071 Query 1777 AGTTATGTGGGCCTAAAGCACGAGCCCACATTGTTTTGCCAGTTCTAGAATCACCTTC 1834 | |||||||| ||||||| | |||||| ||| || || |||||||| ||||| || Sbjct 14072 AATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTC 14129 Score = 104 bits (114), Expect = 4e-19 Identities = 257/385 (67%), Gaps = 40/385 (10%) Strand=Plus/Plus Query 853 CATACCGAGAACGCGTTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTAT 912 ||||| || || || ||||| |||||| | |||||||| ||||| ||||| ||| Sbjct 13084 CATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 913 GCGACATTGAAGATTCGGATCTATTTTTATGATTCGATAACCAATTAATAAATATTGAAC 972 || ||| | || | ||||||||||| || | ||||||||||||||||| Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAAT 13200 Query 973 TTTATTTTATGATCTTCAATGACACC------------AGTTACAT---ATGATCGATCT 1017 ||||||| ||||| ||||| ||| | | |||||| || || || | Sbjct 13201 TTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACAT-T 13259 Query 1018 GTCGCCCACGAAACAGCTCGTATGACGTTATTCAGACCAATAACTCCTAATCTATTTAAA 1077 ||| ||||||| || | || || | || |||||| ||||||| | |||| Sbjct 13260 GTCT--------ACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAA 13311 Query 1078 TACAACATAACT--AAATGCCTAAATCTACTTAAATAA--GTC-GTCCCAGAAGCTCGAA 1132 | ||| || |||| ||||| ||||| || || ||| || | | || Sbjct 13312 AATTTCATTACACGAAATT--TAAATACTCTTAAGAAAACGTATGTCGGAGGACGT--AA 13367 Query 1133 TCGATTCCGTCCAGACTTGGAAGTTCAGGTACGCTTTGTGAAGATTTAGTGCTCTCCTCA 1192 ||| |||| || | |||||| ||| | |||||||||||||| ||| | |||||| Sbjct 13368 ACGA----GTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCA 13423 Query 1193 GGTTGTGGTTGAACCGGATTTGTAT 1217 ||||||||||||| || |||||||| Sbjct 13424 GGTTGTGGTTGAATCGAATTTGTAT 13448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8409772228022