Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004044.1 Length=2734 Score E Sequences producing significant alignments: (Bits) Value seq19028 260 2e-66 >seq19028 Length=31091 Score = 260 bits (288), Expect = 2e-66 Identities = 278/366 (76%), Gaps = 1/366 (0%) Strand=Plus/Plus Query 1639 TTCTTTTCTTCTTCCAGATACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAG 1698 || ||||| || || || ||||||||||||||||| | || || |||||||| | |||| Sbjct 13828 TTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1699 ATAGTGGGGATCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTGGTGTTGCTTTGCCAG 1758 || || || ||||| || || || | || || | ||||| || ||||| ||| Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAA 13947 Query 1759 TCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAATGCGGATCTACGTCATCA 1818 | |||||||||||||| || ||||||||||||||||||||||||||||| |||| |||| Sbjct 13948 TTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCA 14007 Query 1819 ATGACGTTGAACCAAGCATCATTACTGTACACCTTTGGACTCAGATCCAAATGACCACAC 1878 |||| ||| |||| |||| ||| || | || | ||| ||| |||||||| || Sbjct 14008 ATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCAT 14067 Query 1879 AAGTAATTATGTGGTCCTAATGACCTGGCCCACATCGTCTTCCCCGTTCTACTATCACCC 1938 | |||||||||||||||||| || || |||||| |||||||| |||||| |||||| Sbjct 14068 AGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCC 14127 Query 1939 TCTATCACTATACTTACCGGTC-TTAAAGGCCGCGCAGCGGCACTCACAACATTATCGAC 1997 || || || ||||| |||| |||| ||||||||||||||| | |||||| || | Sbjct 14128 TCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGC 14187 Query 1998 CGCCCA 2003 ||||| Sbjct 14188 TGCCCA 14193 Score = 223 bits (246), Expect = 6e-55 Identities = 283/386 (73%), Gaps = 5/386 (1%) Strand=Plus/Plus Query 952 GAATCATACGGAGAATGCATTATTGTTGTACATGGCGTGTACTCATGCCTCTAATCCTGT 1011 || |||||| || |||||||| |||||| || | |||||||| ||||||||||| Sbjct 13080 GACTCATACTGAAAATGCATT---GTTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1012 ATATGCGACGTTGAAAGTGCGCATCTATTTCTATGATTCACAAATGAATTAATAAATATT 1071 |||| || ||| | |||| ||||| ||||| | |||||||||||||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1072 GAATTTTATATCATGTTTTTCAATTACATCTATTGTTCCATTCAGTACATCATATAATAC 1131 ||||||||| ||||| | ||||| |||||| | |||| | | ||||| ||||||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1132 A-TGACTAAAAGCCCTAATACAATTGTTAATGCTAATCACTCCCAACCTATCTAAATATT 1190 | || || | ||| |||||| ||||||||| ||||| || || || | |||||| ||| Sbjct 13257 ATTGTCT-ACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATT 13315 Query 1191 TAATAAATTGGTATTTAAATACTCTTAAGAAATGCGAGGTCTGAGGATGTAAACGAGTCC 1250 | || | | |||||||||||||||||||| | ||| ||||| |||||||||||| Sbjct 13316 TCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCC 13375 Query 1251 AGATTTGGCAGGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTAGTTGA 1310 ||| | | || | || ||| |||||| | || | ||||||||||||| ||||| Sbjct 13376 TGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGA 13435 Query 1311 ATTGGACTTGTATTGTGATTATGTCG 1336 || | | ||||||| |||||||||| Sbjct 13436 ATCGAATTTGTATTTCGATTATGTCG 13461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8636890458600