Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004071.1 Length=2755 Score E Sequences producing significant alignments: (Bits) Value seq19028 196 8e-47 >seq19028 Length=31091 Score = 196 bits (216), Expect = 8e-47 Identities = 538/820 (66%), Gaps = 35/820 (4%) Strand=Plus/Plus Query 1651 TTCTTGTCCTCGTCTAAATACTCTTTATATGAAGAATTGGGACCTGGATTGCAGAGGAAG 1710 || || ||||| || | |||||||||| ||| | ||||| |||||||| | |||| Sbjct 13828 TTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1711 ATTGTTGGGATGCCCCCTTTAATTTGAACTGGCTTCCCGTATTTTGTGTTGCTTTGCCAG 1770 ||||| || || || || || || | || ||| | ||||||||| ||||| ||| Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAA 13947 Query 1771 TCCTTTTGTGCCCCCATGAACTCCTTAAAGTGTTTCAGATAATGCGGGTCAACATCATCT 1830 | |||| |||||||| ||||| |||||||| || ||||||||||| || || | ||| Sbjct 13948 TTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCA 14007 Query 1831 ATGACGTTATACCATGCGTCATTACTGAACACCTTT--GGGCTCAGATCAAGATGACCGC 1888 |||| ||||||||| || | ||| |||| | ||| ||| ||| | |||||||| Sbjct 14008 ATGATGTTATACCAGGCATTATT--TGAATAAATTTTATTATTCAAATCTAAATGACCGC 14065 Query 1889 ACAGATAATTGTGAGGCCCAAGACTTCTGGCCCATACGGTCTTTCCTGTTCTGCTTTCCC 1948 | || ||||| || || || | | ||| ||||| | ||||| |||||||| || | Sbjct 14066 ATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCAC 14125 Query 1949 CTTCAATCACTATACTAATCGGTC-TACTTGGCCGCGCAGCGGCCTCAACGACGTTCTCC 2007 | ||||| || ||||| | |||| | ||||||||||||||| || || || || Sbjct 14126 CCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCA 14185 Query 2008 GCCGCCCATTCTTCAAGTTCTTCTGGAACTTGGTCGAACGAAGAAGACAAAAAAGGAGAA 2067 || ||||| |||| | || ||| |||||| | ||||||| | Sbjct 14186 GCTGCCCAGCACTCAA--------------TTGTTGAAGGAAGAACAACTAAAAGGACTA 14231 Query 2068 ACATAAGGAGCTGGAGGCTCCTGAAAAATCCTATCTAAATTNNNNNNNNNNNNATGAAAT 2127 |||||||| | ||||| | || || | |||||| || |||| || Sbjct 14232 ACATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATAT 14291 Query 2128 TGTAAAACAAAATCTTTG--GGAGCTAACTCCCTTATAACCCTAAGAGCCTCTGACTTAC 2185 || ||| | || ||||| || | || || |||| ||| || ||| | | Sbjct 14292 TG--AAATAGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCT---TCAA 14346 Query 2186 TTCCTG----AGTTAAGCGCTGCGGCGTAAGCGTCATTGGCGGTCTGTTGTCCCCCTCTT 2241 || || | |||| |||| | || | | ||||| | || ||| || ||||| Sbjct 14347 TTGATGTAGCACTTAA-CGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTA 14405 Query 2242 GCAGATCTTGCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTCTCCAGA 2301 ||||||| | ||||||| ||||| | ||||| ||| | || | ||| ||| | | Sbjct 14406 GCAGATCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATG 14465 Query 2302 TAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGAT 2361 || ||| || || || ||||||||| || | ||| || ||| ||||| || | Sbjct 14466 TATTTCTTAACATCTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGG-TATGTGGTGCT 14524 Query 2362 CTGCTTGGGGAT--ACCAGGTCGAAGAATCTGTTATTCGTGCACTGGTACTTTCCCTCGA 2419 | | |||| | | |||||| ||| || | | || ||| || |||| Sbjct 14525 -AGTATTAGGATGGATGATATCGAAGTGTCTAGGGTTTCTAAATTGTGCCTTGCCTTCGA 14583 Query 2420 ATTGAATAAGGGCATGCAGATGAGGTTCCCCATTCTCGTG 2459 |||||||||||||||| |||| |||||||| || ||| Sbjct 14584 ATTGAATAAGGGCATGGCTATGAAATTCCCCATCCTGGTG 14623 Score = 165 bits (182), Expect = 1e-37 Identities = 266/377 (71%), Gaps = 9/377 (2%) Strand=Plus/Plus Query 968 CATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCTGTGTAC 1027 |||||||| ||||| |||| ||||||| | |||||||| ||||||||||| || Sbjct 13084 CATACTGAAAATGCATTGT---TGTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1028 GCTACGTTGAAAATACGTATCTATTTTTATGACTCTGTATCGAATTAATAAATATTGAAT 1087 ||| ||| || ||| | ||||||||||| |||||| |||||||||||||||||| Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAAT 13200 Query 1088 TTTATAT-ATGTACTTGAATCTACTTCAATTGTCGTTTTTAATACATTCCATAATACATG 1146 ||||| | ||| || || ||| || | ||| | | |||||| ||||||||| Sbjct 13201 TTTATTTCATGATATTCAA-GTACATCCACTGTTTGCTCAATTACATTGAATAATACATT 13259 Query 1147 ATTAACTGCTCTAATTACATTATTAAGAGAAATTACACC--AAGGGTATTCAAATATTTG 1204 | || |||||||| | ||| |||| | ||| ||||| | ||| | |||| | Sbjct 13260 GTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCAT 13319 Query 1205 TACACTTGTTTCCTAAATGCGGTTAAGAAAAGACCAGTCGGAGGGCGTGAAATCGTCCAG 1264 ||||| || ||||| | ||||||||| |||||||| ||| || |||| | Sbjct 13320 TACACGAAATT--TAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTG 13377 Query 1265 ATTCGGAAGTTGAGAAAACATATGTGAATCCCCAATGCCTTCCTGAGGTTGTGATTGAAC 1324 || ||||||||| ||| | |||||| || | ||||||| |||||||| ||||| Sbjct 13378 ATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAAT 13437 Query 1325 CGGATCTGGATGTCTAT 1341 || || || || || || Sbjct 13438 CGAATTTGTATTTCGAT 13454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8704066273278