Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004090.1 Length=2768 Score E Sequences producing significant alignments: (Bits) Value seq19028 257 3e-65 >seq19028 Length=31091 Score = 257 bits (284), Expect = 3e-65 Identities = 303/409 (74%), Gaps = 1/409 (0%) Strand=Plus/Plus Query 1620 TGAGGGTGATGAATTCTGCATTCTTTAATGCCCAATCTTTTAAAGCTGAATTTTTATCCT 1679 ||| |||| |||||||||||| | || | ||||| |||||| |||||| |||| Sbjct 13778 TGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCT 13837 Query 1680 CATTCAAGTACTCTTTATATGATGATGTTGGTCCTGGATTGCAAAGGAAGATAGTTGGGA 1739 | | | | |||||||||| || || || || |||||||| | |||||| || || | Sbjct 13838 CCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTA 13897 Query 1740 TTCCACCTTTAATTTGAACTGGCTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGG 1799 | ||||| || || | || ||| | ||||| || ||||| ||| | ||||||| Sbjct 13898 TCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGG 13957 Query 1800 CCCCCATAAATTCTTTAAAGTGCTTTAGATAGTGCGGGTCTACGTCATCAATGACGTTAT 1859 |||||||||| |||||||||||||||||||| ||||| || |||| |||||||| ||||| Sbjct 13958 CCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTAT 14017 Query 1860 ACCAAGCATCATTACTGTATACTTTAGGGCTTAGATCAAGATGTCCACACAAATAATTGT 1919 |||| |||| ||| || | |||| | | ||| | ||| || || | ||||| | Sbjct 14018 ACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTAT 14077 Query 1920 GTGGTCCCAATGATCTGGCCCACATTGTTTTACCTGTACGACTATCACCTTCTATCACAA 1979 ||||||| || ||||| |||||| ||| || ||||| | | ||||| || || |||| Sbjct 14078 GTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAA 14137 Query 1980 TACTTTTGGGTCCCCAA-GGCCGCGCAGCGGCACCACTCACATTCTCAG 2027 |||| ||||||| || ||||||||||||||| | || ||||| |||| Sbjct 14138 TACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAG 14186 Score = 205 bits (226), Expect = 2e-49 Identities = 316/437 (72%), Gaps = 13/437 (3%) Strand=Plus/Plus Query 983 TCATACTGAAAATGCCTTGTTATTGTATATGGCTTGTACTCATGCCAGTAATCCAGTGTA 1042 ||||||||||||||| ||||| |||||| || |||||||| |||||| || || Sbjct 13083 TCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 1043 TACTACTTTGAAGATCA-GAATCTATTTCTATGATTCTGT-TCAGAATTAATAAAGATTG 1100 | |||| ||| || || | | ||||| ||||| ||| ||| |||||||||| |||| Sbjct 13140 TTGTACTATGA-GAACACGCAGTTATTTTTATGAGAGTGTATCA-AATTAATAAATATTG 13197 Query 1101 AATTTTATTATATTTGAATGTGTTACATATTCTGTGTTTTCCAATACATCCCATAATACA 1160 ||||||||| || | | ||||| |||| | || | ||||| |||||||| Sbjct 13198 AATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACA 13257 Query 1161 -TGATTACATGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCTAAATATTT 1219 || |||| |||||||| | ||||||||||||||| ||||| || |||||| |||| Sbjct 13258 TTGTCTACA-GCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1220 CA-TACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCC 1278 || |||| ||| ||||||||||||||||| | ||| |||| |||| ||||||| Sbjct 13317 CATTACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCC 13375 Query 1279 AGATCTGGAAGATTAGAAAACACTGGTGTATTCCCAATGCTTTCCTCAGGTTGTGGTTGA 1338 ||||| |||| | || ||| | ||| | || | | ||||||||||||||||||| Sbjct 13376 TGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGA 13435 Query 1339 ATTGTATTTGGATCGTTATGATGTC-GTGGTTGGTGTTGAATGGTCTCTCGTGGTGCTTG 1397 || | ||||| || || ||||| || || | ||| |||||| | ||| ||| Sbjct 13436 ATCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTG-TTGGTCTGAGATTGTGGTTG 13494 Query 1398 GTTATCTTGAAATATAG 1414 |||||||||||||| Sbjct 13495 AGGATCTTGAAATATAG 13511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8742359878185