Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004153.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq19028 230 4e-57 >seq19028 Length=31091 Score = 230 bits (254), Expect = 4e-57 Identities = 287/392 (73%), Gaps = 1/392 (0%) Strand=Plus/Plus Query 1592 GTGATGCTGACGAAGACTGCATTCTTTATTGCCCACGACTTTAATGCAGTATTCTTTTCT 1651 |||||| || ||| ||||||| | | | ||| |||||| | |||| ||||| Sbjct 13777 GTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCC 13836 Query 1652 TCGTCTAGGTATTCTTTATAGCTTGAGTTGGGCCCTGGATTGCACAGGAAGATAGCTGGA 1711 || || ||| | ||||||||||| || | || || |||||||||| |||||| | || Sbjct 13837 TCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGT 13896 Query 1712 ATGCCACCTTTAATTTGAACTGGTTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGG 1771 || ||||| || || | || || ||||||| ||| ||||| ||| | |||||| Sbjct 13897 ATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGG 13956 Query 1772 GCCCCCATGAATTCTTTAAAATGCTTTAGGTAGTGCGGATCAACGTCATCGATGACGTTG 1831 |||||||| || |||||||| |||||||| || |||||||| |||| ||| |||| ||| Sbjct 13957 GCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTA 14016 Query 1832 AACCAAGCATCATTACTGTACACCTTTGGGCTCAAATCAAGATGACCACACAGATAATTG 1891 |||| |||| ||| || | || ||||||| | |||||| || || ||||| Sbjct 14017 TACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTA 14076 Query 1892 TGTGGACCCAATGATCGAGCCCACATCGTCTTCCCCGTCCTGCTATCACCCTCTATGACT 1951 ||||| || || |||| |||||| |||||||| || || |||||||| ||||| Sbjct 14077 TGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACA 14136 Query 1952 ATACTTATTGGTCG-TAATGGCCGCGCAGCGG 1982 ||||| | ||||| ||||||||||||||||| Sbjct 14137 ATACTCTTGGGTCGTTAATGGCCGCGCAGCGG 14168 Score = 93.3 bits (102), Expect = 7e-16 Identities = 226/340 (66%), Gaps = 2/340 (1%) Strand=Plus/Plus Query 975 TTATTGTATATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACTTTAAAAATCAGG 1034 || |||||||| | |||||||| |||||| || ||| |||| | | || | Sbjct 13099 TTGTTGTATATTAGTTCAACTCATGCATCTAATCCTGTATATTGTACTATGAGAACACGC 13158 Query 1035 ATCTATTTCTATGATTCTGT-TCAGAATTAATAAAGATTAAATTTTATTACATGAGAACT 1093 | ||||| ||||| ||| ||| |||||||||| ||| ||||||||| ||||| | Sbjct 13159 AGTTATTTTTATGAGAGTGTATCA-AATTAATAAATATTGAATTTTATTTCATGATATTC 13217 Query 1094 GTTTACAAATGTTGTTTGCGTTAATGCGTCCCATAATACATAATTTACTGCTCTAATTAC 1153 |||| ||||||| | | | | ||||||||| | ||| |||||||| | Sbjct 13218 AAGTACATCCACTGTTTGCTCAATTACATTGAATAATACATTGTCTACAGCTCTAATAAT 13277 Query 1154 ATTATTCAAACTAATTACACCCAAATTATTGAGAAATTTCAAAACTTGTGTCCTAAATAC 1213 ||| || | |||||| ||||| || | | |||||||| || | ||||||| Sbjct 13278 ATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCATTACACGAAATTTAAATAC 13337 Query 1214 TCTTAAGAAACGACCAGTCTGAAGGTGTGAGTTCGTCCATATCCGGAAGTCCAGAAAACA 1273 |||||||||| ||| || | || | |||| ||| ||||| || ||| Sbjct 13338 TCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTGATCTTGAAGTTGAGGAAAGC 13397 Query 1274 TTGGTGCATCCCCAGTGCTTTCCTCGGGTTGTAGTTGAAT 1313 || ||| | |||| | |||||| |||||| ||||||| Sbjct 13398 TTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAAT 13437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8672077790098