Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004192.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq19028 426 3e-116 >seq19028 Length=31091 Score = 426 bits (472), Expect = 3e-116 Identities = 684/978 (70%), Gaps = 21/978 (2%) Strand=Plus/Plus Query 1619 GCATTCTTTAAAGCCCAATTTTTGAGTGCGGAATTCTTCTCTTCATCCAAGAACTCTTTA 1678 ||||| | |||| ||||||||| | | ||| || || || || | |||||||||| Sbjct 13795 GCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTA 13854 Query 1679 TAGCTGGAATGCGGTCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGC 1738 ||||||||| || || |||||||| | |||||| | || || ||||| || || | Sbjct 13855 TAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTT 13914 Query 1739 ACTGGCTTTCCGTATTTCGTAT-TTGATTG-CCAGTCCCTTTGGGCCCCCATGAATTCCT 1796 || ||| |||||||||| || ||| | | ||| | |||||||||||||| || || | Sbjct 13915 ACAGGCCTTCCGTATTT--TACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAACTCTT 13972 Query 1797 TAAAGTGTTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCGTCATTAC 1856 ||||||| ||||| || || |||||||||| |||||||| ||| |||||||| | ||| Sbjct 13973 TAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTG 14032 Query 1857 TGTAGACCTTAGGGCTAAGGTCTAGATGACCACACAAATAATTGTGTGGACCCAACGACC 1916 || | ||| | | |||| |||||| || | ||||| ||||| || || || | Sbjct 14033 AATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATC 14092 Query 1917 TAGCCCACATGGTCTTCCCTGTTCGACTATCACCCTCTACCACAATACTCATGGGTC-TC 1975 | |||||| ||||||||||||| | |||||||| | ||||||||| |||||| | Sbjct 14093 TTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTT 14152 Query 1976 AATGGCCGCGCAGCGGCACTCACCACGTTCTCGGAAGCCCATTCCTCAAGTTCTCCGGGA 2035 |||||||||||||||||| | || || || | ||||| ||||| | | ||| Sbjct 14153 AATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCACTCAATTGTTGAAGGA 14212 Query 2036 ACTTGATCAAAAGANNNNNNNNNNNNAGGAGAAACATAAACCTCCAACGGAGGTGTAAAA 2095 | || ||| | |||| ||||||| || || || | || Sbjct 14213 A---GAACAACTAAA-----------AGGACTAACATAAGGTTCAGGAGGGGGCATGAAT 14258 Query 2096 ATCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTTGGGAGTTTT 2155 || | |||||| || || ||||||||||||||| | ||| | | ||| | |||| Sbjct 14259 ATTCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAAACTTTGCTGGCATTTTT 14318 Query 2156 TCCCTTATTATTGCTAATGCCGCTTCAGCCGAACCCGCATTTAAGGCCTCTGCTGCAGCA 2215 || || || || | | || ||||| || ||| |||| || ||||| | || Sbjct 14319 TCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATACA 14378 Query 2216 TCATTAGCTGTCTGTTGACCTCCTCGAGCAGATCTTCCATCGATCTGAAAGCGACCCCAG 2275 ||||| | ||| ||| |||||||| |||||||| ||||||||| ||||| |||||| Sbjct 14379 TCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAG 14438 Query 2276 TCGATGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCGGAGCTGGACTTAGCTCCC 2335 ||| ||||||||| ||| ||| ||||||| ||| ||||| || || ||||| Sbjct 14439 TCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGAAGATGATTTAGCGGAT 14498 Query 2336 TGGAAATTTGGGTGGAATTGGGTGGCGTTATTAGGGTGAGTGACATCGAAATGTCTTGGG 2395 ||||| ||||||||| || |||| ||||||| || ||| |||||| ||||| ||| Sbjct 14499 TGGAAGTTTGGGTGGTATGTGGTGCTAGTATTAGGATGGATGATATCGAAGTGTCTAGGG 14558 Query 2396 TTTCTGAACTGGGATTTACCTTTGAATTGGATGAGCGCGTGGATATGCAAGCTCCCATCT 2455 ||||| || || | || |||| |||||| || || || ||| |||| || |||||| Sbjct 14559 TTTCTAAATTGTGCCTTGCCTTCGAATTGAATAAGGGCATGGCTATGAAATTCCCCATCC 14618 Query 2456 TGGTGTTTTTCCTGTGAAACTCTGATAAATAATTTATCAGAAGGGCAATTTATAGATTTC 2515 ||||||||||| || | ||||| ||| | ||||| ||||| ||| | |||| Sbjct 14619 TGGTGTTTTTCTTGACAGACTCT--AAAACAGTTTATTTGAAGGACAAGAAACCTGTTTC 14676 Query 2516 AGAATTTCTAGCATTTGTTCTTTCGGTATTGGGCATTTTGGATAAGTGAGGAAGATATTT 2575 | |||| ||||| ||||| || | || ||||||||| | || || || || ||| Sbjct 14677 AAGTGCTCTAAGATTTGATCTTTAGGAAGAGGACATTTTGGAAATGTAAGAAATATGTTT 14736 Query 2576 TTGGCTTTAACTTGGAAT 2593 || | || || |||||| Sbjct 14737 TTAGAATTTACCTGGAAT 14754 Score = 159 bits (176), Expect = 6e-36 Identities = 253/360 (70%), Gaps = 11/360 (3%) Strand=Plus/Plus Query 969 CACACTGAGAATGCTTTGATGTTGTACATGGCGTGTACTCATGCTTCTAACCCTGTGTAT 1028 || ||||| ||||| ||| ||||| || | |||||||| ||||| ||||| ||| Sbjct 13084 CATACTGAAAATGCATTG---TTGTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1029 GCTACTTTGAAGATACGGATCTATTTTTATGATTCCGTAACAAATTAATAAATATTGAAT 1088 |||| ||| | ||| | ||||||||||| ||| |||||||||||||||||||| Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAAT 13200 Query 1089 TTTATT--ATGTT--TGAACTTTGTACATAAATTGTTTGCGCTACTACATTCCATAATAC 1144 |||||| ||| | | || |||||| | ||||||| | | |||||| ||||||| Sbjct 13201 TTTATTTCATGATATTCAA----GTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1145 ATGATCGACTGCTCTAATTACATTGTTTATACTAATTACAGCAAAATTATTTAAAAACTG 1204 || || || |||||||| | |||||| |||||||| ||| | || | |||||| | Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1205 CAAAACTTGGGTCCTAAATACCCTTAAGAAATGACCAGTCCGAGGCTGTAAGGTCGTCCA 1264 || || | ||||||| ||||||||| ||| |||| |||| |||| Sbjct 13317 CATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCT 13376 Query 1265 GATTCGGAAGGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAA 1324 ||| |||| | || ||| |||||| | || | |||||||||||||| ||||| Sbjct 13377 GATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8697668576642