Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30]
33,873 sequences; 833,080,760 total letters
Query= NC_004300.1
Length=2757
Score E
Sequences producing significant alignments: (Bits) Value
seq19028 417 1e-113
>seq19028
Length=31091
Score = 417 bits (462), Expect = 1e-113
Identities = 674/970 (69%), Gaps = 19/970 (2%)
Strand=Plus/Plus
Query 1624 GCATTCTTTAAAGCCCAATTCTTGAGTGCAGCATTTTTCTCTTCATCCAAGAACTCTTTA 1683
||||| | |||| |||||| || | | | |||||| || || || | ||||||||||
Sbjct 13795 GCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTA 13854
Query 1684 TAACTTGAGTCAGGTCCTGGATTGCAGAGGAAGATTGTGGGAATTCCGCCTTTAATTTGA 1743
|| || || ||| || |||||||| | ||||||||| || || || || || || |
Sbjct 13855 TAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTT 13914
Query 1744 ACTGGCTTCCCGTATTTTGTATTTGATTG-CCAGTCCTTTTGGGCCCCCATGAATTCCTT 1802
|| ||| | ||||||||| || | | | ||| | ||||||||||||| || || ||
Sbjct 13915 ACAGGCCTTCCGTATTTTACCTT-GCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTT 13973
Query 1803 AAAGTGCTTTAGGTAGTGGGGGTCTACGTCATCAATTACGTTATACCAGGCATCATTACT 1862
|||||||||||| || || || || |||| |||||| | |||||||||||||| |||
Sbjct 13974 AAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGA 14033
Query 1863 GTAGACTTTTGGGCTAAGGTCTAGATGACCACACAGATAATTATGTGGTCCAAGTGATCT 1922
|| | ||| | | |||| |||||| || || |||||||||||||| | |||||
Sbjct 14034 ATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCT 14093
Query 1923 GGCCCACATCGTCTTCCCAGTTCTACTGTCACCCTCGATCACTATACTTATGGGCC-TTA 1981
|||||| |||||||| |||||| |||||||| || || ||||| |||| | |||
Sbjct 14094 TGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTA 14153
Query 1982 TAGGCCGCGCAGCGGCACTGACGACGTTCTCGGCAGCCCACTCCTCAAGTTCTTCTGGAA 2041
||||||||||||||| || || || || ||||| |||||
Sbjct 14154 ATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCACTCAA------------ 14201
Query 2042 CTTGATCGAATGAAGANNNNNNNNNNNNNNAAACATAAACCTCCATTGGAGGTGTAAAAA 2101
||| | ||| ||||| ||||||| || || || | || |
Sbjct 14202 -TTGTT-GAAGGAAGAACAACTAAAAGGACTAACATAAGGTTCAGGAGGGGGCATGAATA 14259
Query 2102 TCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTTT 2161
| | |||||| || || ||||||||||||||| | ||| | | || | |||||
Sbjct 14260 TTCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAAACTTTGCTGGCATTTTTT 14319
Query 2162 CCCTAATTATTGCTAAAGCTGCTTCGGTTGAACCTGCATTTAAGGCCTCTGCTGCAGCAT 2221
| ||||| || | | ||| |||| |||| ||| |||| || ||||| | |||
Sbjct 14320 CTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATACAT 14379
Query 2222 CATTAGCTGTCTGTTGACCTCCTCGTGCAGATCTTCCATCGATCTGAAACTCACCCCAGT 2281
|||| | ||| ||| |||||||| ||||||| ||||||||| ||||| | |||||||
Sbjct 14380 CATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAGT 14439
Query 2282 CGATGTAATCACTGTCCTTCTCGATGTAGGACTTGACATCGGAGCTGGACTTAGCTCCCT 2341
|| ||||||||| ||| ||| ||||||| ||| ||||| || || ||||| |
Sbjct 14440 CGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGAAGATGATTTAGCGGATT 14499
Query 2342 GGAAGTTTGGATGGAATTGGGTGGAGCTATTAGGGTGAGTGACATCGAAATGTCTGGGGT 2401
|||||||||| ||| || |||| ||||||| || ||| |||||| ||||| ||||
Sbjct 14500 GGAAGTTTGGGTGGTATGTGGTGCTAGTATTAGGATGGATGATATCGAAGTGTCTAGGGT 14559
Query 2402 TTCGGAACTTGGATTTACCTTTGAATTGGATGAGGGCATGGATATGCATAGACCCATCTT 2461
||| || | | || |||| |||||| || ||||||||| |||| | |||||| |
Sbjct 14560 TTCTAAATTGTGCCTTGCCTTCGAATTGAATAAGGGCATGGCTATGAAATTCCCCATCCT 14619
Query 2462 GGTGTTTCTCTTGGGCTACTCTGATAAATAATCTATTAGACGGACAGGAAATGTTTTTAA 2521
||||||| ||||| ||||| ||| | | |||| || ||||| |||| | ||| |
Sbjct 14620 GGTGTTTTTCTTGACAGACTCT--AAAACAGTTTATTTGAAGGACAAGAAACCTGTTTCA 14677
Query 2522 GGATTTCGAGCATTTGTTCTTTGGGTATTGGGCATTTGGGATAAGTAAGGAAGATATTTT 2581
| || | ||||| ||||| || | || ||||| ||| | ||||| || || ||||
Sbjct 14678 AGTGCTCTAAGATTTGATCTTTAGGAAGAGGACATTTTGGAAATGTAAGAAATATGTTTT 14737
Query 2582 TGGCATTAAC 2591
| | ||| ||
Sbjct 14738 TAGAATTTAC 14747
Score = 113 bits (124), Expect = 8e-22
Identities = 243/363 (67%), Gaps = 9/363 (2%)
Strand=Plus/Plus
Query 967 TCACACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTA 1026
||| ||||| ||||| |||| ||||||| | |||||||| ||||||||||| ||
Sbjct 13083 TCATACTGAAAATGCATTGT---TGTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139
Query 1027 TGCTACTTTGAAAGTTAGGAGTTACTTCTACGATTCTGTAACAAATTAACATTAATAAAG 1086
| |||| ||| | | ||||| || || || |||| ||| |||||||||
Sbjct 13140 TTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAA------ATTAATAAAT 13193
Query 1087 ATTGAATTTTATTGAATATGATTGGTCTACATATACAACGTGATGTAATACATTCCATAA 1146
||||||||||||| || ||| ||||| || || | | |||||| ||||
Sbjct 13194 ATTGAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAA 13253
Query 1147 TACATGATCAACTGATTTAAGTACAGTGTTAATACTGATAACTCCTAAGTTATTTAAATA 1206
||||| || || | | ||| | | |||||||||| ||||| ||||| | |||| |
Sbjct 13254 TACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAA 13313
Query 1207 CTTAAGAACTTGGGTCTTAAATACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCAT 1266
|| | || | |||||||| ||||||||| |||||||| || | |
Sbjct 13314 TTTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGT 13373
Query 1267 CCAGATTCGGAAGGCTAGGAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATT 1326
|| ||| |||| |||||| |||||| | || | |||||||||||||| ||
Sbjct 13374 CCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTT 13433
Query 1327 GAA 1329
|||
Sbjct 13434 GAA 13436
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8710463969914
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |