Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004300.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq19028 417 1e-113 >seq19028 Length=31091 Score = 417 bits (462), Expect = 1e-113 Identities = 674/970 (69%), Gaps = 19/970 (2%) Strand=Plus/Plus Query 1624 GCATTCTTTAAAGCCCAATTCTTGAGTGCAGCATTTTTCTCTTCATCCAAGAACTCTTTA 1683 ||||| | |||| |||||| || | | | |||||| || || || | |||||||||| Sbjct 13795 GCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTA 13854 Query 1684 TAACTTGAGTCAGGTCCTGGATTGCAGAGGAAGATTGTGGGAATTCCGCCTTTAATTTGA 1743 || || || ||| || |||||||| | ||||||||| || || || || || || | Sbjct 13855 TAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTT 13914 Query 1744 ACTGGCTTCCCGTATTTTGTATTTGATTG-CCAGTCCTTTTGGGCCCCCATGAATTCCTT 1802 || ||| | ||||||||| || | | | ||| | ||||||||||||| || || || Sbjct 13915 ACAGGCCTTCCGTATTTTACCTT-GCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTT 13973 Query 1803 AAAGTGCTTTAGGTAGTGGGGGTCTACGTCATCAATTACGTTATACCAGGCATCATTACT 1862 |||||||||||| || || || || |||| |||||| | |||||||||||||| ||| Sbjct 13974 AAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGA 14033 Query 1863 GTAGACTTTTGGGCTAAGGTCTAGATGACCACACAGATAATTATGTGGTCCAAGTGATCT 1922 || | ||| | | |||| |||||| || || |||||||||||||| | ||||| Sbjct 14034 ATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCT 14093 Query 1923 GGCCCACATCGTCTTCCCAGTTCTACTGTCACCCTCGATCACTATACTTATGGGCC-TTA 1981 |||||| |||||||| |||||| |||||||| || || ||||| |||| | ||| Sbjct 14094 TGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTA 14153 Query 1982 TAGGCCGCGCAGCGGCACTGACGACGTTCTCGGCAGCCCACTCCTCAAGTTCTTCTGGAA 2041 ||||||||||||||| || || || || ||||| ||||| Sbjct 14154 ATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCACTCAA------------ 14201 Query 2042 CTTGATCGAATGAAGANNNNNNNNNNNNNNAAACATAAACCTCCATTGGAGGTGTAAAAA 2101 ||| | ||| ||||| ||||||| || || || | || | Sbjct 14202 -TTGTT-GAAGGAAGAACAACTAAAAGGACTAACATAAGGTTCAGGAGGGGGCATGAATA 14259 Query 2102 TCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTTT 2161 | | |||||| || || ||||||||||||||| | ||| | | || | ||||| Sbjct 14260 TTCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAAACTTTGCTGGCATTTTTT 14319 Query 2162 CCCTAATTATTGCTAAAGCTGCTTCGGTTGAACCTGCATTTAAGGCCTCTGCTGCAGCAT 2221 | ||||| || | | ||| |||| |||| ||| |||| || ||||| | ||| Sbjct 14320 CTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATACAT 14379 Query 2222 CATTAGCTGTCTGTTGACCTCCTCGTGCAGATCTTCCATCGATCTGAAACTCACCCCAGT 2281 |||| | ||| ||| |||||||| ||||||| ||||||||| ||||| | ||||||| Sbjct 14380 CATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAGT 14439 Query 2282 CGATGTAATCACTGTCCTTCTCGATGTAGGACTTGACATCGGAGCTGGACTTAGCTCCCT 2341 || ||||||||| ||| ||| ||||||| ||| ||||| || || ||||| | Sbjct 14440 CGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGAAGATGATTTAGCGGATT 14499 Query 2342 GGAAGTTTGGATGGAATTGGGTGGAGCTATTAGGGTGAGTGACATCGAAATGTCTGGGGT 2401 |||||||||| ||| || |||| ||||||| || ||| |||||| ||||| |||| Sbjct 14500 GGAAGTTTGGGTGGTATGTGGTGCTAGTATTAGGATGGATGATATCGAAGTGTCTAGGGT 14559 Query 2402 TTCGGAACTTGGATTTACCTTTGAATTGGATGAGGGCATGGATATGCATAGACCCATCTT 2461 ||| || | | || |||| |||||| || ||||||||| |||| | |||||| | Sbjct 14560 TTCTAAATTGTGCCTTGCCTTCGAATTGAATAAGGGCATGGCTATGAAATTCCCCATCCT 14619 Query 2462 GGTGTTTCTCTTGGGCTACTCTGATAAATAATCTATTAGACGGACAGGAAATGTTTTTAA 2521 ||||||| ||||| ||||| ||| | | |||| || ||||| |||| | ||| | Sbjct 14620 GGTGTTTTTCTTGACAGACTCT--AAAACAGTTTATTTGAAGGACAAGAAACCTGTTTCA 14677 Query 2522 GGATTTCGAGCATTTGTTCTTTGGGTATTGGGCATTTGGGATAAGTAAGGAAGATATTTT 2581 | || | ||||| ||||| || | || ||||| ||| | ||||| || || |||| Sbjct 14678 AGTGCTCTAAGATTTGATCTTTAGGAAGAGGACATTTTGGAAATGTAAGAAATATGTTTT 14737 Query 2582 TGGCATTAAC 2591 | | ||| || Sbjct 14738 TAGAATTTAC 14747 Score = 113 bits (124), Expect = 8e-22 Identities = 243/363 (67%), Gaps = 9/363 (2%) Strand=Plus/Plus Query 967 TCACACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTA 1026 ||| ||||| ||||| |||| ||||||| | |||||||| ||||||||||| || Sbjct 13083 TCATACTGAAAATGCATTGT---TGTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 1027 TGCTACTTTGAAAGTTAGGAGTTACTTCTACGATTCTGTAACAAATTAACATTAATAAAG 1086 | |||| ||| | | ||||| || || || |||| ||| ||||||||| Sbjct 13140 TTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAA------ATTAATAAAT 13193 Query 1087 ATTGAATTTTATTGAATATGATTGGTCTACATATACAACGTGATGTAATACATTCCATAA 1146 ||||||||||||| || ||| ||||| || || | | |||||| |||| Sbjct 13194 ATTGAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAA 13253 Query 1147 TACATGATCAACTGATTTAAGTACAGTGTTAATACTGATAACTCCTAAGTTATTTAAATA 1206 ||||| || || | | ||| | | |||||||||| ||||| ||||| | |||| | Sbjct 13254 TACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAA 13313 Query 1207 CTTAAGAACTTGGGTCTTAAATACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCAT 1266 || | || | |||||||| ||||||||| |||||||| || | | Sbjct 13314 TTTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGT 13373 Query 1267 CCAGATTCGGAAGGCTAGGAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATT 1326 || ||| |||| |||||| |||||| | || | |||||||||||||| || Sbjct 13374 CCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTT 13433 Query 1327 GAA 1329 ||| Sbjct 13434 GAA 13436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8710463969914