Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004356.1 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq19028 250 4e-63 >seq19028 Length=31091 Score = 250 bits (276), Expect = 4e-63 Identities = 305/415 (73%), Gaps = 1/415 (0%) Strand=Plus/Plus Query 1593 TGAGGGTGATGAATTCCGCATTCTTTAATGCCCACTCTTTTAAAGCTGAATTCTTTTCTT 1652 ||| |||| |||||| ||||| | || | ||| | |||||| ||| ||||| | Sbjct 13778 TGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCT 13837 Query 1653 CCTCCAAGAATTCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGA 1712 |||| | ||| |||||||| || || || || |||||||| | |||||| || || | Sbjct 13838 CCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTA 13897 Query 1713 TTCCACCTTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGG 1772 | ||||| || || | | || | ||||| || ||||| ||| | ||||||| Sbjct 13898 TCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGG 13957 Query 1773 CCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTAT 1832 ||||||| || |||||||||||||||||||| || || || |||| |||||||| ||||| Sbjct 13958 CCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTAT 14017 Query 1833 ACCAAGCATCATTACTGTACACCTTTGGACTCAGATCCAGATGACCGCACAGATAATTAT 1892 |||| |||| ||| || | || | ||| ||| | ||||||||| || ||||||| Sbjct 14018 ACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTAT 14077 Query 1893 GTGGGCCCAATGAACGCGCCCACATGGTTTTTCCTGTACGACTCTCTCCCTCTATGACAA 1952 |||| || || || | |||||| || || ||||| | | ||| ||||| ||||||| Sbjct 14078 GTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAA 14137 Query 1953 TACTGATGGGTC-TCCATGGCCGCGCACCGGCATGCCTTACATTATCAGCAGCCC 2006 |||| |||||| | ||||||||||| |||||| ||| ||||| ||||| |||| Sbjct 14138 TACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCC 14192 Score = 219 bits (242), Expect = 7e-54 Identities = 312/433 (72%), Gaps = 7/433 (2%) Strand=Plus/Plus Query 957 CATACCGAAAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTAT 1016 ||||| |||||||| |||| ||||||| | |||||||| ||||||||||| ||| Sbjct 13084 CATACTGAAAATGCATTGT---TGTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1017 GCTACTTTGAAAGTCAGGAGTTATTTTTATGACTCAGTGACGAATTAATAAAGATTGAAT 1076 |||| ||| | | |||||||||||||| || | |||||||||| ||||||| Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAAT 13200 Query 1077 TTTATTATATTAGAATTTGTTACATATTCTGTTTTTTCCAATACATCCCATAATACA-TG 1135 |||||| || | | | ||||| |||||| || | ||||| |||||||| || Sbjct 13201 TTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACATTG 13260 Query 1136 ATTACATGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCTAAATATTTCA- 1194 |||| |||||||| | ||||||||||||||| ||||| || |||||| |||||| Sbjct 13261 TCTACA-GCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCAT 13319 Query 1195 TACATTGAACCTTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCCAGA 1254 |||| ||| |||||||||||||||||| | ||| |||| |||| ||||||| || Sbjct 13320 TACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTGA 13378 Query 1255 TCTGGAAGCTCAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGAACT 1314 ||| |||| | || ||| | ||| | || | |||||||||||||||||||| Sbjct 13379 TCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAATC 13438 Query 1315 GTATTTGGATCTGTATGATGTCGTGTTTGGTGTTGAATGGTCTCTCGTGGTGCTTGGTTA 1374 | ||||| || | || |||||| | | | || |||||| | ||| ||| | Sbjct 13439 GAATTTGTATTTCGATTATGTCGGTTGTCGAATTTGTTGGTCTGAGATTGTGGTTGAGGA 13498 Query 1375 TCTTGAAATAGAG 1387 |||||||||| || Sbjct 13499 TCTTGAAATATAG 13511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8688072031688