Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004558.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq19028 241 2e-60 >seq19028 Length=31091 Score = 241 bits (266), Expect = 2e-60 Identities = 447/653 (68%), Gaps = 21/653 (3%) Strand=Plus/Plus Query 1622 TGCATTTTTTAAAGCCCAGTTTTTTAGTGCAGAATTCTTTTCCTCATCCAAGTATTCTTT 1681 |||||| | |||| ||| ||||||| | | ||| |||||||| || | | | ||||| Sbjct 13794 TGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTT 13853 Query 1682 ATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGGTAGTGGGAATTCCGCCTTTAATTTG 1741 ||||||||| | || || |||||||| | |||| | || || || || || || || | Sbjct 13854 ATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTT 13913 Query 1742 AACTGGCTTCCCGTACTTTGTATTTGATTG-CCAGTCCCTTTGGGCCCCCATGAATTCTT 1800 || ||| | ||||| ||| || | | | ||| | |||||||||||||| || |||| Sbjct 13914 TACAGGCCTTCCGTATTTTACCTT-GCTGGACCAATTGCTTTGGGCCCCCATAAACTCTT 13972 Query 1801 TAAAGTGCTTTAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATTAC 1860 ||||||||||||| || || || ||||||| |||||||| ||| |||||||||| ||| Sbjct 13973 TAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTG 14032 Query 1861 TGTAAACCTTTGGGCTAAGGTCTAGATGACCACACAAATAATTATGTGGTCCCAATGATC 1920 |||| || | | |||| |||||| || | |||||||||||||| || |||| Sbjct 14033 AATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATC 14092 Query 1921 TGGCCCACATAGTCTTCCCCGTCCTACTGTCACCCTCAATTACTATACTTATGGGTC-TC 1979 | |||||| |||||||| || ||| ||||||||||| || ||||| |||||| | Sbjct 14093 TTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTT 14152 Query 1980 AGAGGCCGCGCAGCGGGACTGCAGACGTTCTCGGCAGCCCACGCTTCAAGTTCTTCTGGA 2039 | ||||||||||||| | | || || || || ||||| |||| Sbjct 14153 AATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCACTCAA----------- 14201 Query 2040 ACTTGGTCGAAAGAAGAAGATATAAAAGGTGAAACATAAACATCCATTGGAGGTGTAAAA 2099 | || ||| |||||| | ||||||| ||||||| || || || | || Sbjct 14202 ---TTGTTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTCAGGAGGGGGCATGAAT 14258 Query 2100 ATCCTATCTAAATTAGAATTTAAATTGTGAAATTGTAAAACAAAATCTTTG--GGAGCTT 2157 || | |||||| || | | || ||| ||| |||| ||| | || ||||| || || Sbjct 14259 ATTCGATCTAATTTTGGAACTATATTATGATATTG--AAATAGAAACTTTGCTGGCATTT 14316 Query 2158 TCTCCCTTAATATATTGAGGGCCTGAGCTTTGGACCCTGAATTGATTGCCTCGGCATATG 2217 | || || | ||| || || | | | || | | | | || || ||| || Sbjct 14317 TTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATA 14376 Query 2218 CGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCGTCCATCGACTTGGaaa 2270 | || || | | || ||||||||||||| ||||||||||||| ||| ||| Sbjct 14377 CATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAAA 14429 Score = 114 bits (126), Expect = 2e-22 Identities = 248/362 (69%), Gaps = 13/362 (4%) Strand=Plus/Plus Query 972 TCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTA 1031 ||||||||| ||||| |||| ||||||| | |||||||| ||||||||||| || Sbjct 13083 TCATACTGAAAATGCATTGT---TGTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 1032 TGCGACTCTCAAAGTGAGGAGTTATTTCTATGACTCAGTCACAAACTAATAAATATTAAA 1091 | ||| | | | | |||||||| ||||| || |||| ||||||||||| || Sbjct 13140 TTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAA 13199 Query 1092 TTTTATTATATTTGAACTGTC---TACAAATGTTGTTTGCGTCAA-TGCATCCCATAGTA 1147 ||||||| | ||| | || |||| ||||||| |||| | ||| ||| || Sbjct 13200 TTTTATTTCA--TGATAT-TCAAGTACATCCACTGTTTGC-TCAATTACATTGAATAATA 13255 Query 1148 CATAATTCACTGCTCTAATTACATTATTCAAACTAATTACACCCAAATTATTAAGAAATT 1207 ||| | || |||||||| | ||| || | |||||| ||||| || | | ||||| Sbjct 13256 CATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATT 13315 Query 1208 TCATCACTTGTGTTTTAAATACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCATCC 1267 |||| || | ||||||||| ||||||||| |||||||| || | ||| Sbjct 13316 TCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCC 13375 Query 1268 AGCATC-GGTAGGTTAGGAAACATTTGTGTATCCCCAACACTTTCCTCAGGTTGTGATTG 1326 | ||| | || | |||||| |||||| | || | |||||||||||||| ||| Sbjct 13376 TG-ATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTG 13434 Query 1327 AA 1328 || Sbjct 13435 AA 13436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8710463969914