Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004569.1 Length=2782 Score E Sequences producing significant alignments: (Bits) Value seq19028 336 4e-89 >seq19028 Length=31091 Score = 336 bits (372), Expect = 4e-89 Identities = 959/1467 (65%), Gaps = 98/1467 (7%) Strand=Plus/Plus Query 975 CATACTGAGAATGCGTTGTTGTTGTATATGGCATGTACTCATGCTTCTAACCCAGTGTAT 1034 |||||||| ||||| ||||||| |||| | |||||||| ||||| || || ||| Sbjct 13084 CATACTGAAAATGCATTGTTGT---ATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1035 GCTACGTTGAAAATACGTATCTATTTTTATGATGCTGTAACAAATTAATAAAGATTGTAT 1094 ||| ||| || ||| | ||||||||||| |||| |||||||||||| |||| || Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAAT 13200 Query 1095 TTTATTTCATGTTGTTCAATTACATTTATTGTGTTTTCAAGTACATCATACAATACATGA 1154 ||||||||||| | ||||| ||||| | ||| | |||| ||||| | ||||||| Sbjct 13201 TTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACATTG 13260 Query 1155 TCAACTGCTCTGATTACATTGTTAATTGAAATTACACCAATACTATCTAAATACTTAAGA 1214 || || ||||| || | ||||||||| ||| ||||| | | |||||| | || | Sbjct 13261 TCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCATT 13320 Query 1215 ACTTGATGTCTAAATACTCTTAAGAAACGACCAGTCTGAGGCTGTAATGTCGTCCAGATG 1274 || || | ||||||||||||||||| ||| |||| |||| |||| ||| Sbjct 13321 ACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTGATC 13380 Query 1275 CGGAAGTTGAGAAAACATTTGTGAATCCCCAATACCTTCCTGATGTTGTGGTTGAATCTT 1334 ||||||||| ||| |||||||| || | ||||||| | |||||||||||||| Sbjct 13381 TTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAATCGA 13440 Query 1335 ATCTGAATGGAAATGATGTCGTGGTTC--ATTAGAAATGGCCTCTGGCTGTGTTCTGTTA 1392 || || || || |||||| || ||| | ||| || | |||| | | Sbjct 13441 ATTTGTATTTCGATTATGTCGGTTGTCGAATTTGT--TGGTCTGAGATTGTGGTTGAGGA 13498 Query 1393 TCTTGAAATAGAGGGGATTGTT--TATCTCCCAGATA------------AAA-------A 1431 |||||||||| || | | | ||| ||||| ||| ||| | Sbjct 13499 TCTTGAAATATAGAA-ACAGCTAATATTTCCCAAATATGTGGTTGACGTAAACGACTAGA 13557 Query 1432 CGCCATTCTCTGCCTGAGGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATTGTTG 1491 |||||||| || || ||||||||||| ||||||||||||| |||||||| Sbjct 13558 CGCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATCCATGACCAGAA 13617 Query 1492 CAGTTGAGGTGGAGGTAGTATGAGCAGCCACAGTCTAGGTCTATACGCTTACGCCTTATT 1551 ||| | | | | | ||| || ||||| ||||||| || | | || ||| Sbjct 13618 CAGCTAATATTTTTGAATATTGAACATCCACAAGGCAGGTCTAGTCGTCTTCTTCTGATT 13677 Query 1552 GGTTTCTTCTTG-------GCTATCT---TGTGTTGGA---CCTTG-------------- 1584 || |||||||| | ||| | || | | | ||||| Sbjct 13678 TGTCTCTTCTTGATATCCGGATATGTAAATGAGGTTGCTTTCCTTGTATAATGTCTATGC 13737 Query 1585 ----ATTG--ATA------CTTGC--GAACAGTGGCTCGTAGAGGGTGACGAAGGTTGCA 1630 |||| ||| | ||| ||| | ||| | || |||| ||| |||| Sbjct 13738 ATCCATTGGGATAACATTTCCTGCACGAATAATGGTTGTGTGATGGTGTAGAATTCTGCA 13797 Query 1631 TTCTTGAGAGCCCAATTTTTCAAGGATATGtttttttCTTCGTCTAGATATTCCCTATAT 1690 || | | || ||||||||| || || |||||||| || || || | || |||| Sbjct 13798 TTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTATAG 13857 Query 1691 GAGGAGGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCC-CCCTTTAATTTGAAT 1749 ||| ||||| || |||||||| | |||||| || || || || ||||||| || | Sbjct 13858 CTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTTACA 13917 Query 1750 GGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAA 1809 || ||||| ||| ||| ||||| ||| | || ||||||||||| || || || || Sbjct 13918 GGCCTTCC-GTATTTTACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTTAAA 13976 Query 1810 GTGCTTTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCATGCATCATTACTGTA 1869 |||||||| ||||||||| || |||| |||||||| ||| ||||| |||| ||| || | Sbjct 13977 GTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATT--TGAA 14034 Query 1870 TACCTTT--GGGCTTAGGTCTAGATGTCCACATAAATAATTATGTGGGCCTAGAGACCTG 1927 || ||| | | |||| ||| || |||| ||||||||||| |||| ||| || Sbjct 14035 TAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTT 14094 Query 1928 GCCCACATTGTTTTGCCTGTTCTGCTATCACCCTCAATGACAATACTATTAGGTC-TCCA 1986 |||||| ||| || |||||||| |||||||||||||||||||| || |||| | | Sbjct 14095 GCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAA 14154 Query 1987 TGGCCGCGCAGCGGAAGACACGACGTTCTCGGACACCCATACTTCAAGTTCATCTGGAAC 2046 |||||||||||||| | | || || || | |||| |||| Sbjct 14155 TGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCACTCAA------------- 14201 Query 2047 TTGATTAAAAGATGAAGATAAAAAGGGAGAAATATAAGGAGCCGGAGGCTCCTGAAAAAT 2106 ||| || || || ||| | ||| ||| || |||||| | ||||| | || || Sbjct 14202 TTG-TTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTCAGGAGGGGGCATGAATAT 14260 Query 2107 TCTATCTAAATTANNNNNNNNNNNATGAAATTGTAAAATATAATCTTT--CGGTATTAAT 2164 || |||||| || |||| |||| ||||| || |||| || ||| | Sbjct 14261 TCGATCTAATTTTGGAACTATATTATGATATTG--AAATAGAAACTTTGCTGGCATTTTT 14318 Query 2165 TCTTTAATGATTCTAAGAGCCTC-TGACTTACTGCCTGAGTTAAGAGCTGCGGCGTAAGC 2223 ||| |||| || ||| || || | | || || | |||| ||| | || | | Sbjct 14319 TCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTAA-CGCTTCTGCAGATAC 14377 Query 2224 GTCATTGGCTGACTGCTGACCCCCACGTGCAGATCGTCCGTCGATCTGAAACTCACCCCA 2283 ||||| | || || ||| || | ||||||||||| ||||| ||||| | ||||| Sbjct 14378 ATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCA 14437 Query 2284 GTCGACGGTGTCTCCGTCCTTATCGACATAAGACTTGACATCTGAACTGGATTTAGCTCC 2343 |||| | || | ||| || ||| || ||| ||||||||| |||||||| Sbjct 14438 GTCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGAAGATGATTTAGCGGA 14497 Query 2344 CTGAATGTTTGGATGGAAATGTGCTGC 2370 || | |||||| ||| ||||| ||| Sbjct 14498 TTGGAAGTTTGGGTGG-TATGTGGTGC 14523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8787143280415