Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004607.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq19028 223 6e-55 >seq19028 Length=31091 Score = 223 bits (246), Expect = 6e-55 Identities = 271/367 (74%), Gaps = 7/367 (2%) Strand=Plus/Plus Query 1611 CCAGTTTTTTAGTGCGGTGTTCTTTTCCTCGTCTAGGAATTCTTTATAACTGCTGTTGGG 1670 ||| ||||||| | | || |||||||| || ||||| |||||||| ||| | || Sbjct 13809 CCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGG 13868 Query 1671 ACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTA 1730 |||||||||||| | ||||||||| |||||||| || || || | || ||| | ||||| Sbjct 13869 ACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTA 13928 Query 1731 CTTT---GTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAG 1787 ||| || |||| ||| | |||||||||||||| |||||||||||||| || || Sbjct 13929 TTTTACCTTGCTGGA---CCAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAG 13985 Query 1788 GAAATGCGGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTTACTGTAGACCTTGGG 1847 ||||||| ||||||| |||||||| |||||||||||| | || || | || Sbjct 13986 ATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATT 14045 Query 1848 ACTCAGATCCAGATGTCCGCACAAATAGTTATGTGGTCCCAGTGATCTAGCCCACATCGT 1907 | ||| ||| | ||| ||||| | || ||||||||||| | ||||| |||||| || Sbjct 14046 ATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGT 14105 Query 1908 CTTTCCCGTTCGACTATCTCCTTCAATTACTATACTCCGAGGTC-TAAGGGGCCGCGCAG 1966 ||| || |||| | || || ||||| || |||||| |||| | | |||||||||| Sbjct 14106 CTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAG 14165 Query 1967 CGGGATC 1973 ||| ||| Sbjct 14166 CGGCATC 14172 Score = 100 bits (110), Expect = 5e-18 Identities = 245/367 (67%), Gaps = 11/367 (3%) Strand=Plus/Plus Query 937 GAATCATACGGAAAATGCGTTAATGCTTTATATGGCTTGTACTCACGCTAGCAACCCTGT 996 || |||||| |||||||| || || ||||| || ||||| || || ||||| Sbjct 13080 GACTCATACTGAAAATGCATTGTTG---TATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 997 TTATGCTACGTTGAAGATTAGGATATATTTTTATGACTCTGTAACGAATTGATATTAATA 1056 ||| ||| ||| | | | ||||||||||| |||| | |||| ||| |||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATA--AATA 13194 Query 1057 AAGTTTGAATTTTATTTCTGAATATTGATCTACATACATAGTTTGTTGGATTACATTGTA 1116 |||||||||||||| ||||| | ||||| || ||||| | ||||||||| | Sbjct 13195 ----TTGAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAA 13250 Query 1117 CAATACATGTTCTACAGCTTTAATAACTAAATTAATTGAAATTACACCGAGATTGTTC-A 1175 ||||||| ||||||||| |||||| ||||| ||| ||||| | || | || | Sbjct 13251 TAATACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTA-ATCGGTCTA 13309 Query 1176 GATATTTGAGGACTTGGGTTTTGAATACCCTTaaaaaaaGACCAGTCTGAGGGTGTAAGG 1235 | |||| | || | ||| ||||| ||||| |||| ||| |||| |||| Sbjct 13310 AAAATTTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAAC 13369 Query 1236 TCGTCCAGATTCGGAAGGTTAGAAAACACTTGTGCAGTCCCAGAGCTTTCCGAGTGTTGT 1295 |||| ||| |||| | || ||| ||||| || ||| | |||| ||||| Sbjct 13370 GAGTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGT 13429 Query 1296 AGTTGAA 1302 |||||| Sbjct 13430 GGTTGAA 13436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8691270880006