Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004611.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq19028 206 5e-50 >seq19028 Length=31091 Score = 206 bits (228), Expect = 5e-50 Identities = 468/693 (68%), Gaps = 37/693 (5%) Strand=Plus/Plus Query 1632 AtttttttCTTCATCCAGATATTCCTTATAGCTGCTGTTTGGACCTTTATTGCACAGGAA 1691 ||||||||| || || || | || ||||||||| | ||||| |||||||| ||| Sbjct 13827 ATTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAA 13886 Query 1692 GATAGTGGGAATTCCACCTTTAATCATGACCGGCTTTCCGTACTTCGTGTTGCTTTGGCA 1751 ||| || || || ||||| || ||| | || ||| ||||||| || ||||| || Sbjct 13887 GATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCA 13946 Query 1752 GTCACGCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCAACGTCATC 1811 | | ||||||||||| || |||||||||||||||||||| || ||||| |||| ||| Sbjct 13947 ATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATC 14006 Query 1812 AATGACGTTGTACCAGGCATCATTGCTATAGACCTTTGGGCTCAGATCAAGATGTCCACA 1871 ||||| ||| |||||||||| ||| ||| | || ||| ||| | ||| || || Sbjct 14007 AATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCA 14066 Query 1872 CAAGTAATTGTGTGGTCCTAAGCACCGAGCCCACATCGTTTTGCCCGTCCTACTATCCCC 1931 | |||||| ||||||||||| | | |||||| || || || || ||| || || Sbjct 14067 TAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACC 14126 Query 1932 CTCTATGACTATGCTTATGGG-CCTAAAAGGCCGCGCAGCGGCACACACAACATTAGACG 1990 ||| ||||| || || |||| | | || ||||||||||||||| | |||||| Sbjct 14127 CTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATT----- 14181 Query 1991 AGACCCAATCGACGAGGTCTG-CCGGAACTC---TGTCGAAGGATGAAATTGAAAATGGA 2046 || || ||| || | |||| ||| |||||| ||| ||| ||| Sbjct 14182 -------TTC----AG--CTGCCCAGCACTCAATTGTTGAAGGAAGAACAACTAAAAGGA 14228 Query 2047 GAAACATAAACCTCGGAAGGAGGTTGAAAAATACGATCTAAATTGGTATTTAAATTGTGA 2106 ||||||| || | ||| || || || |||||||| || | | || ||| ||| Sbjct 14229 CTAACATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGA 14288 Query 2107 AACTGCAGAACGTAATCTTTTGGGGC-TAATTCCTTTAATACTCTCAAAGCATCGTCTTT 2165 | || || || |||| ||| | || || ||||| | ||||| | |||| Sbjct 14289 TATTG--AAATAGAAACTTTGCTGGCATTTTTTCTCTAATAAT-AGAAAGC-GCTTCTTC 14344 Query 2166 ATTTCCCGT----GTTAATCGCCTGGGCATATGCATCGTTCGCCGTTTGTTGACCACCAC 2221 | || || |||| ||| | ||| || |||| || | || ||| ||| || | Sbjct 14345 AATTGATGTAGCACTTAA-CGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTC 14403 Query 2222 GGGCAGATCGTCCATCGATCTGGAAAACACCCCATTC--TAGAACGTCTCCATCTTTGGC 2279 ||||||||||||||||| || ||| ||||| || | || || | ||||| || Sbjct 14404 TAGCAGATCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAA--TCACAGTCTTTCGC 14461 Query 2280 GATGTAGTTTTTGACGTCCGACGCTGATTTAGC 2312 |||||| || || || || || | ||||||||| Sbjct 14462 GATGTATTTCTTAACATCTGAAGATGATTTAGC 14494 Score = 168 bits (186), Expect = 1e-38 Identities = 271/387 (70%), Gaps = 7/387 (2%) Strand=Plus/Plus Query 946 GAATCATACTGAAAACGCATTAATGTTGTATATGGCCTGTACTCACGCATCAAATCCTGT 1005 || |||||||||||| ||||| ||||||||| | ||||| ||||| |||||||| Sbjct 13080 GACTCATACTGAAAATGCATT---GTTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1006 ATATGCTACTTTGAAAATCCGGATCTACTTTTATGATTCGGCCACAAATTAATAAATATC 1065 |||| |||| ||| || || | || |||||||| | ||||||||||||||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1066 CAGTTTTATATCATACGAAGTCCA--TACATCAATTGTTTGCTCCAATACATTATCCAAT 1123 | |||||| |||| || | || |||||| | ||||||||| | |||||| ||| Sbjct 13197 GAATTTTATTTCAT--GATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAAT 13254 Query 1124 ACATGATAAACTGCTCTTATTACATTATAAATTCCTATGACACCTAACATATCCAGGTAC 1183 |||| | || ||||| || | ||| | ||| | || |||||||| || | | Sbjct 13255 ACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAAT 13314 Query 1184 TTAAGGACCTGGGTTTTGAAGACTCTCAAGAAAATCCCAATCTGAGGGCGTAAGCCCGTC 1243 || | || | ||| || ||||| ||||||| || |||| ||||| | ||| Sbjct 13315 TTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTC 13374 Query 1244 CAGATTTTGAAAGTTAGAAAACACTTGTGAAGTCCCAGGGCTTTCCGCAGGTTGTGGTTG 1303 | ||| ||||| | || ||| |||||||| ||| | |||| ||||||||||||| Sbjct 13375 CTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTG 13434 Query 1304 AACTGTATTTGAATCTTGATTATGTCG 1330 || | ||||| || | |||||||||| Sbjct 13435 AATCGAATTTGTATTTCGATTATGTCG 13461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8652884700190