Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004614.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq19028 223 6e-55 >seq19028 Length=31091 Score = 223 bits (246), Expect = 6e-55 Identities = 477/705 (68%), Gaps = 21/705 (3%) Strand=Plus/Plus Query 1619 GCATTCTTTAAAGCCCAATTCTTGAGTGCAGCATTCTTCTCTTCATCCAAGAACTCTTTA 1678 ||||| | |||| |||||| || | | | ||| || || || || | |||||||||| Sbjct 13795 GCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTA 13854 Query 1679 TAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGA 1738 || || ||| | || || |||||||| | |||||| || || || || || || || | Sbjct 13855 TAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTT 13914 Query 1739 ACTGGCTTTCCGTATTTTGTATTTGATTG-CCAGTCCCTTTGGGCCCCCATGAATTCCTT 1797 || ||| ||||||||||| || | | | ||| | |||||||||||||| || || || Sbjct 13915 ACAGGCCTTCCGTATTTTACCTT-GCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTT 13973 Query 1798 AAAGTGCTTTAGGTAGTGGGGATCGACGTCATCTATGATGTTGAACCAGGCCTCATTATT 1857 |||||||||||| || || |||||||||| ||| |||||||| ||||||| | ||| Sbjct 13974 AAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGA 14033 Query 1858 GTACACCTTTGGGCTAAGGTCTAGATGACCACACAAATAGTTATGCGGTCCCAGTGATCT 1917 || | || | | |||| |||||| || | || ||||| ||||| | ||||| Sbjct 14034 ATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCT 14093 Query 1918 GGCCCACATCGTCTTCCCCGTTCGACTATCACCCTCTATCACTATACTTATGGGTC-TTA 1976 |||||| |||||||| |||| | |||||||| || || ||||| |||||| ||| Sbjct 14094 TGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTA 14153 Query 1977 AAGGCCGCGCAGCGGCACTGACAACGTTCTCGGCAGCCCATTCTTCAAGTTCCTCCGGAA 2036 | ||||||||||||||| ||| || || || ||||| || ||| | Sbjct 14154 ATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCA----GCA-----CTC----A 14200 Query 2037 CTTGATCAAAAGAAGATGAATTAAAAGGAGAAACATAAACCTCCACCGGAGGTGTAAAAA 2096 ||| | || ||||| || |||||||| ||||||| || || || | || | Sbjct 14201 ATTG-TTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTCAGGAGGGGGCATGAATA 14259 Query 2097 TCCTATCTAAATTAGCATTTAAATTATGAAACTGTAATACAAAATCTTTG--GGAGCCTT 2154 | | |||||| || | | || ||||||| | || |||| ||| ||||| || || Sbjct 14260 TTCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAAA--CTTTGCTGGCATTTT 14317 Query 2155 CTCCCTTAAAATATTGAGGGCCGCAGCCTTGGACCCTGAATTGATTGCCTCGGCATATGC 2214 || || | |||| || || | | | || | | | | || || ||| || | Sbjct 14318 TTCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATAC 14377 Query 2215 GTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTGCCATCGATCTGGAAAACTCCAAA 2274 || || | | || ||||||||||||| |||| |||||||| || ||| || | Sbjct 14378 ATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCA 14437 Query 2275 ATCAATGAAGTCTCCGTCTTTCTCCACATAGGCTTTGACATCTGA 2319 || || | || | ||||||| | | || || |||||||| Sbjct 14438 GTCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGA 14482 Score = 156 bits (172), Expect = 7e-35 Identities = 393/591 (66%), Gaps = 41/591 (7%) Strand=Plus/Plus Query 965 GAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACACATGCCTCTAACCCAGT 1024 || |||| |||| ||||| || ||||||||| | || ||||| ||||| || || Sbjct 13080 GACTCATACTGAAAATGCATT---GTTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1025 GTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAATAAATATT 1084 ||| |||| ||| | ||| | ||||| ||||| ||| |||||||||||||||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1085 GAATTTTATTGAATAAGATTGGTCTACATATACAATATGTTCTAATACATCCCATAATAC 1144 |||||||||| || | ||| ||||| || | || || | ||||| ||||||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1145 ATGATCAACTGCACGAATTACATTATTAATACTGATAACTCCTAAATTATCTAAATATTT 1204 || || || || | ||| | ||| |||||||| ||||| ||||| |||||| |||| Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1205 AAACACTTGAGTCTTAAAGACTCTTAAGAAACGACCAGTCTGAGGCTGTGAAGTCATCCA 1264 | || || ||||| |||||||||||| ||| |||| || || ||| Sbjct 13317 CATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCT 13376 Query 1265 GATTCGGTAGACTAGGAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAA 1324 ||| | || |||||| |||||| | || | |||||||||||||| ||||| Sbjct 13377 GATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436 Query 1325 CTGAAGTTGGATGATGATGATGTCTCTGTTTGTCAGGAA-----TGGCCTG---TTGTGG 1376 ||| ||| || ||| ||||| | ||||| ||| ||| ||| |||||| Sbjct 13437 TCGAATTTGTATTTCGATTATGTC---GGTTGTC--GAATTTGTTGGTCTGAGATTGTGG 13491 Query 1377 TGCTCTGTTATCTTGAAATAGAG-TGGATTTTGAATCTCCC-------------AGGTAA 1422 | | | ||||||||||| || | | || |||| | |||| Sbjct 13492 T--TGAG-GATCTTGAAATATAGAAACAGCTAATATTTCCCAAATATGTGGTTGACGTAA 13548 Query 1423 AC------ACGCCATTCACTGCTTGAGCTGCAGTGATGGGTTCCCCGGTGCGTGAATCCA 1476 || |||||||||| ||||| ||||||||| |||||| |||||| ||||| Sbjct 13549 ACGACTAGACGCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATCCA 13608 Query 1477 TGATCGTGGCAGGCTAGTGCTATAAAGTA-TGAACATCCACAAGGGAGATC 1526 ||| | || |||| | | | | || ||||||||||||||| || || Sbjct 13609 TGACCAGAACA-GCTAATATTTTTGAATATTGAACATCCACAAGGCAGGTC 13658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8723259363186