Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30]
33,873 sequences; 833,080,760 total letters
Query= NC_004614.1
Length=2761
Score E
Sequences producing significant alignments: (Bits) Value
seq19028 223 6e-55
>seq19028
Length=31091
Score = 223 bits (246), Expect = 6e-55
Identities = 477/705 (68%), Gaps = 21/705 (3%)
Strand=Plus/Plus
Query 1619 GCATTCTTTAAAGCCCAATTCTTGAGTGCAGCATTCTTCTCTTCATCCAAGAACTCTTTA 1678
||||| | |||| |||||| || | | | ||| || || || || | ||||||||||
Sbjct 13795 GCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTA 13854
Query 1679 TAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGA 1738
|| || ||| | || || |||||||| | |||||| || || || || || || || |
Sbjct 13855 TAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTT 13914
Query 1739 ACTGGCTTTCCGTATTTTGTATTTGATTG-CCAGTCCCTTTGGGCCCCCATGAATTCCTT 1797
|| ||| ||||||||||| || | | | ||| | |||||||||||||| || || ||
Sbjct 13915 ACAGGCCTTCCGTATTTTACCTT-GCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTT 13973
Query 1798 AAAGTGCTTTAGGTAGTGGGGATCGACGTCATCTATGATGTTGAACCAGGCCTCATTATT 1857
|||||||||||| || || |||||||||| ||| |||||||| ||||||| | |||
Sbjct 13974 AAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGA 14033
Query 1858 GTACACCTTTGGGCTAAGGTCTAGATGACCACACAAATAGTTATGCGGTCCCAGTGATCT 1917
|| | || | | |||| |||||| || | || ||||| ||||| | |||||
Sbjct 14034 ATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCT 14093
Query 1918 GGCCCACATCGTCTTCCCCGTTCGACTATCACCCTCTATCACTATACTTATGGGTC-TTA 1976
|||||| |||||||| |||| | |||||||| || || ||||| |||||| |||
Sbjct 14094 TGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTA 14153
Query 1977 AAGGCCGCGCAGCGGCACTGACAACGTTCTCGGCAGCCCATTCTTCAAGTTCCTCCGGAA 2036
| ||||||||||||||| ||| || || || ||||| || ||| |
Sbjct 14154 ATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCA----GCA-----CTC----A 14200
Query 2037 CTTGATCAAAAGAAGATGAATTAAAAGGAGAAACATAAACCTCCACCGGAGGTGTAAAAA 2096
||| | || ||||| || |||||||| ||||||| || || || | || |
Sbjct 14201 ATTG-TTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTCAGGAGGGGGCATGAATA 14259
Query 2097 TCCTATCTAAATTAGCATTTAAATTATGAAACTGTAATACAAAATCTTTG--GGAGCCTT 2154
| | |||||| || | | || ||||||| | || |||| ||| ||||| || ||
Sbjct 14260 TTCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAAA--CTTTGCTGGCATTTT 14317
Query 2155 CTCCCTTAAAATATTGAGGGCCGCAGCCTTGGACCCTGAATTGATTGCCTCGGCATATGC 2214
|| || | |||| || || | | | || | | | | || || ||| || |
Sbjct 14318 TTCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATAC 14377
Query 2215 GTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTGCCATCGATCTGGAAAACTCCAAA 2274
|| || | | || ||||||||||||| |||| |||||||| || ||| || |
Sbjct 14378 ATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCA 14437
Query 2275 ATCAATGAAGTCTCCGTCTTTCTCCACATAGGCTTTGACATCTGA 2319
|| || | || | ||||||| | | || || ||||||||
Sbjct 14438 GTCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGA 14482
Score = 156 bits (172), Expect = 7e-35
Identities = 393/591 (66%), Gaps = 41/591 (7%)
Strand=Plus/Plus
Query 965 GAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACACATGCCTCTAACCCAGT 1024
|| |||| |||| ||||| || ||||||||| | || ||||| ||||| || ||
Sbjct 13080 GACTCATACTGAAAATGCATT---GTTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136
Query 1025 GTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAATAAATATT 1084
||| |||| ||| | ||| | ||||| ||||| ||| ||||||||||||||||
Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196
Query 1085 GAATTTTATTGAATAAGATTGGTCTACATATACAATATGTTCTAATACATCCCATAATAC 1144
|||||||||| || | ||| ||||| || | || || | ||||| |||||||
Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256
Query 1145 ATGATCAACTGCACGAATTACATTATTAATACTGATAACTCCTAAATTATCTAAATATTT 1204
|| || || || | ||| | ||| |||||||| ||||| ||||| |||||| ||||
Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316
Query 1205 AAACACTTGAGTCTTAAAGACTCTTAAGAAACGACCAGTCTGAGGCTGTGAAGTCATCCA 1264
| || || ||||| |||||||||||| ||| |||| || || |||
Sbjct 13317 CATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCT 13376
Query 1265 GATTCGGTAGACTAGGAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAA 1324
||| | || |||||| |||||| | || | |||||||||||||| |||||
Sbjct 13377 GATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436
Query 1325 CTGAAGTTGGATGATGATGATGTCTCTGTTTGTCAGGAA-----TGGCCTG---TTGTGG 1376
||| ||| || ||| ||||| | ||||| ||| ||| ||| ||||||
Sbjct 13437 TCGAATTTGTATTTCGATTATGTC---GGTTGTC--GAATTTGTTGGTCTGAGATTGTGG 13491
Query 1377 TGCTCTGTTATCTTGAAATAGAG-TGGATTTTGAATCTCCC-------------AGGTAA 1422
| | | ||||||||||| || | | || |||| | ||||
Sbjct 13492 T--TGAG-GATCTTGAAATATAGAAACAGCTAATATTTCCCAAATATGTGGTTGACGTAA 13548
Query 1423 AC------ACGCCATTCACTGCTTGAGCTGCAGTGATGGGTTCCCCGGTGCGTGAATCCA 1476
|| |||||||||| ||||| ||||||||| |||||| |||||| |||||
Sbjct 13549 ACGACTAGACGCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATCCA 13608
Query 1477 TGATCGTGGCAGGCTAGTGCTATAAAGTA-TGAACATCCACAAGGGAGATC 1526
||| | || |||| | | | | || ||||||||||||||| || ||
Sbjct 13609 TGACCAGAACA-GCTAATATTTTTGAATATTGAACATCCACAAGGCAGGTC 13658
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8723259363186
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |