Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30]
33,873 sequences; 833,080,760 total letters
Query= NC_004626.1
Length=2741
Score E
Sequences producing significant alignments: (Bits) Value
seq19028 266 6e-68
>seq19028
Length=31091
Score = 266 bits (294), Expect = 6e-68
Identities = 505/736 (69%), Gaps = 27/736 (4%)
Strand=Plus/Plus
Query 1594 GAGGGTGACGAATTCCGCATTCTTTATAGCCCACTCTTTTAATGCTGAATTCTTTTCTTC 1653
|| |||| |||||| ||||| | | || ||| | ||||||| ||| ||||| ||
Sbjct 13779 GATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTC 13838
Query 1654 GTCCAAGTACTCTTTATATGATGATGTTGGCCCTGGATTGCAAAGGAAGATAGTTGGGAT 1713
|| | | |||||||||| || || || || |||||||| | |||||| || || ||
Sbjct 13839 CTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTAT 13898
Query 1714 TCCACCTTTAATTTGAATTGGTTTCCCGTATTTAGTGTTGCTTTGCCAGTCCCTTTGGGC 1773
||||| || || | | || | |||||||| ||||| ||| | ||||||||
Sbjct 13899 CCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGC 13958
Query 1774 CCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTATA 1833
|||||| || |||||||||||||||||||| || || || |||| |||||||| ||||||
Sbjct 13959 CCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATA 14018
Query 1834 CCAAGCATCATTACTGTATACTTTTGGACTCAGATCTAGATGACCGCACAAATAATTATG 1893
||| |||| ||| || | ||| | ||| ||||| ||||||||| | ||||||||
Sbjct 14019 CCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATG 14078
Query 1894 TGGTCCCAGTGACCTGGCCCACATTGTTTTACCAGTACGACTATCACCTTCTATCACAAT 1953
|||||| | || || |||||| ||| || || || | | ||||| || || |||||
Sbjct 14079 TGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAAT 14138
Query 1954 ACTGATGGGTC-TCCATGGCCGCGCAGCGGCACCACTCACATTTTCAGAAACCCACTCTT 2012
||| |||||| | ||||||||||||||||| | || |||||||||| |||| |
Sbjct 14139 ACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCACT 14198
Query 2013 CAAGTTCTTCCGGGACTTGATCAAATGAAGAAGATaaaaaaggacaaacaaaaacctcta 2072
||| ||| | || |||||| | |||||||| |||| || ||
Sbjct 14199 CAA-------------TTG-TTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTC-- 14242
Query 2073 aagga-ggtgca--aaaaTCCTATCTAAATTAGCATTTAAATTATGAAATTGTAAAACAT 2129
|||| || ||| || || | |||||| || | | || ||||||| |||| ||| |
Sbjct 14243 -AGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTG--AAATAG 14299
Query 2130 AATCTTT--AGGAGCTAACTCCTTAATTACATTAAGAGCCTC-TGACTTACTGCCGCTGT 2186
|| |||| || | || |||| | | ||| || || | | || || || |
Sbjct 14300 AAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACT 14359
Query 2187 TAAGTGCCTGGGCGTAAGCGTCATTGGCTGTCTGTTGTCCTCCTCTTGCAGATCGTCCAT 2246
||| || | || | | ||||| | ||| ||| |||||||| |||||||||||||
Sbjct 14360 TAA-CGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCAT 14418
Query 2247 CGATCTGAAACTCACCCCATTCGAGGGTGTCTCCGTCCTTGTCGATATAGGACTTGACGT 2306
|||| ||||| | ||||| ||| | || | ||| || |||| || ||| || |
Sbjct 14419 CGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACAT 14478
Query 2307 CGGAGCTGGATTTAGC 2322
| || ||||||||
Sbjct 14479 CTGAAGATGATTTAGC 14494
Score = 187 bits (206), Expect = 4e-44
Identities = 312/437 (71%), Gaps = 13/437 (3%)
Strand=Plus/Plus
Query 956 TCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCCAGTAATCCAGTGTA 1015
||||||||| ||||| ||||| |||||| || |||||||| |||||| || ||
Sbjct 13083 TCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139
Query 1016 TGCTACTTTGAAGATCA-GAATCTATTTCTATGATTCTGT-TCAGAATTAATAAAGATTG 1073
| |||| ||| || || | | ||||| ||||| ||| ||| |||||||||| ||||
Sbjct 13140 TTGTACTATGA-GAACACGCAGTTATTTTTATGAGAGTGTATCA-AATTAATAAATATTG 13197
Query 1074 AATTTTATTATATGAGAATTTGTTACATATTCTGTATTTTCCAATACATCCCATAATACA 1133
||||||||| |||| | | ||||| |||| | || | ||||| ||||||||
Sbjct 13198 AATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACA 13257
Query 1134 TGATC-ACATGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATTTAAATATTT 1192
| || ||| |||||||| | ||||||||||||||| ||||| || | |||| ||||
Sbjct 13258 TTGTCTACA-GCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316
Query 1193 CA-TACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCC 1251
|| |||| ||| ||||||||||||||||| | ||| |||| |||| |||||||
Sbjct 13317 CATTACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCC 13375
Query 1252 AGATCTGGAAGATCAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGATTGA 1311
||||| |||| | || ||| | ||| | || | |||||||||||||| ||||
Sbjct 13376 TGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGA 13435
Query 1312 ACTGTATTCTGATCGTTATGATGTC-GTTGTTGGTGTTGAATGGCCTCTCGTGGTGCTTG 1370
| | ||| || || ||||| ||||| | ||| ||| || | ||| |||
Sbjct 13436 ATCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTG-TTGGTCTGAGATTGTGGTTG 13494
Query 1371 ATTATCTTGAAATATAG 1387
| ||||||||||||||
Sbjct 13495 AGGATCTTGAAATATAG 13511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8659282396826
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |