Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004626.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value seq19028 266 6e-68 >seq19028 Length=31091 Score = 266 bits (294), Expect = 6e-68 Identities = 505/736 (69%), Gaps = 27/736 (4%) Strand=Plus/Plus Query 1594 GAGGGTGACGAATTCCGCATTCTTTATAGCCCACTCTTTTAATGCTGAATTCTTTTCTTC 1653 || |||| |||||| ||||| | | || ||| | ||||||| ||| ||||| || Sbjct 13779 GATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTC 13838 Query 1654 GTCCAAGTACTCTTTATATGATGATGTTGGCCCTGGATTGCAAAGGAAGATAGTTGGGAT 1713 || | | |||||||||| || || || || |||||||| | |||||| || || || Sbjct 13839 CTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTAT 13898 Query 1714 TCCACCTTTAATTTGAATTGGTTTCCCGTATTTAGTGTTGCTTTGCCAGTCCCTTTGGGC 1773 ||||| || || | | || | |||||||| ||||| ||| | |||||||| Sbjct 13899 CCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGC 13958 Query 1774 CCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTATA 1833 |||||| || |||||||||||||||||||| || || || |||| |||||||| |||||| Sbjct 13959 CCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATA 14018 Query 1834 CCAAGCATCATTACTGTATACTTTTGGACTCAGATCTAGATGACCGCACAAATAATTATG 1893 ||| |||| ||| || | ||| | ||| ||||| ||||||||| | |||||||| Sbjct 14019 CCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATG 14078 Query 1894 TGGTCCCAGTGACCTGGCCCACATTGTTTTACCAGTACGACTATCACCTTCTATCACAAT 1953 |||||| | || || |||||| ||| || || || | | ||||| || || ||||| Sbjct 14079 TGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAAT 14138 Query 1954 ACTGATGGGTC-TCCATGGCCGCGCAGCGGCACCACTCACATTTTCAGAAACCCACTCTT 2012 ||| |||||| | ||||||||||||||||| | || |||||||||| |||| | Sbjct 14139 ACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCACT 14198 Query 2013 CAAGTTCTTCCGGGACTTGATCAAATGAAGAAGATaaaaaaggacaaacaaaaacctcta 2072 ||| ||| | || |||||| | |||||||| |||| || || Sbjct 14199 CAA-------------TTG-TTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTC-- 14242 Query 2073 aagga-ggtgca--aaaaTCCTATCTAAATTAGCATTTAAATTATGAAATTGTAAAACAT 2129 |||| || ||| || || | |||||| || | | || ||||||| |||| ||| | Sbjct 14243 -AGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTG--AAATAG 14299 Query 2130 AATCTTT--AGGAGCTAACTCCTTAATTACATTAAGAGCCTC-TGACTTACTGCCGCTGT 2186 || |||| || | || |||| | | ||| || || | | || || || | Sbjct 14300 AAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACT 14359 Query 2187 TAAGTGCCTGGGCGTAAGCGTCATTGGCTGTCTGTTGTCCTCCTCTTGCAGATCGTCCAT 2246 ||| || | || | | ||||| | ||| ||| |||||||| ||||||||||||| Sbjct 14360 TAA-CGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCAT 14418 Query 2247 CGATCTGAAACTCACCCCATTCGAGGGTGTCTCCGTCCTTGTCGATATAGGACTTGACGT 2306 |||| ||||| | ||||| ||| | || | ||| || |||| || ||| || | Sbjct 14419 CGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACAT 14478 Query 2307 CGGAGCTGGATTTAGC 2322 | || |||||||| Sbjct 14479 CTGAAGATGATTTAGC 14494 Score = 187 bits (206), Expect = 4e-44 Identities = 312/437 (71%), Gaps = 13/437 (3%) Strand=Plus/Plus Query 956 TCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCCAGTAATCCAGTGTA 1015 ||||||||| ||||| ||||| |||||| || |||||||| |||||| || || Sbjct 13083 TCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 1016 TGCTACTTTGAAGATCA-GAATCTATTTCTATGATTCTGT-TCAGAATTAATAAAGATTG 1073 | |||| ||| || || | | ||||| ||||| ||| ||| |||||||||| |||| Sbjct 13140 TTGTACTATGA-GAACACGCAGTTATTTTTATGAGAGTGTATCA-AATTAATAAATATTG 13197 Query 1074 AATTTTATTATATGAGAATTTGTTACATATTCTGTATTTTCCAATACATCCCATAATACA 1133 ||||||||| |||| | | ||||| |||| | || | ||||| |||||||| Sbjct 13198 AATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACA 13257 Query 1134 TGATC-ACATGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATTTAAATATTT 1192 | || ||| |||||||| | ||||||||||||||| ||||| || | |||| |||| Sbjct 13258 TTGTCTACA-GCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1193 CA-TACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCC 1251 || |||| ||| ||||||||||||||||| | ||| |||| |||| ||||||| Sbjct 13317 CATTACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCC 13375 Query 1252 AGATCTGGAAGATCAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGATTGA 1311 ||||| |||| | || ||| | ||| | || | |||||||||||||| |||| Sbjct 13376 TGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGA 13435 Query 1312 ACTGTATTCTGATCGTTATGATGTC-GTTGTTGGTGTTGAATGGCCTCTCGTGGTGCTTG 1370 | | ||| || || ||||| ||||| | ||| ||| || | ||| ||| Sbjct 13436 ATCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTG-TTGGTCTGAGATTGTGGTTG 13494 Query 1371 ATTATCTTGAAATATAG 1387 | |||||||||||||| Sbjct 13495 AGGATCTTGAAATATAG 13511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8659282396826